PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Neem_23775_f_2 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Sapindales; Meliaceae; Azadirachta
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Family | G2-like | ||||||||
Protein Properties | Length: 357aa MW: 40723.9 Da PI: 8.2804 | ||||||||
Description | G2-like family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | G2-like | 98.6 | 4.5e-31 | 179 | 233 | 1 | 55 |
G2-like 1 kprlrWtpeLHerFveaveqLGGsekAtPktilelmkvkgLtlehvkSHLQkYRl 55 k+r+rWt++LH+rFve+v+ LGG+e+AtPk il+lm+++gLt+ hvkSHLQkYR+ Neem_23775_f_2 179 KTRIRWTEDLHNRFVECVDLLGGAERATPKGILKLMDIDGLTIFHVKSHLQKYRI 233 68****************************************************7 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
PROSITE profile | PS51294 | 10.709 | 176 | 236 | IPR017930 | Myb domain |
SuperFamily | SSF46689 | 1.97E-17 | 177 | 233 | IPR009057 | Homeodomain-like |
Gene3D | G3DSA:1.10.10.60 | 1.8E-27 | 178 | 234 | IPR009057 | Homeodomain-like |
TIGRFAMs | TIGR01557 | 7.6E-24 | 179 | 233 | IPR006447 | Myb domain, plants |
Pfam | PF00249 | 5.2E-7 | 183 | 232 | IPR001005 | SANT/Myb domain |
Pfam | PF14379 | 2.8E-19 | 265 | 312 | IPR025756 | MYB-CC type transcription factor, LHEQLE-containing domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0003677 | Molecular Function | DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 357 aa Download sequence Send to blast |
MDTQERKIQE KNYTYISSDR QQRWNKGIWF QSQFPKLNPG SSNGSGNIIS SNFGLPTSGF 60 YSADNCMDFP LGHCNIIDGL PAYSQNDFKG FHLIQSSAAK FQLQDHQIPN FSAKSHLDCY 120 RNSPGSVLSF MQKPAEESES NLMNQRQNYI PKPSSSYLQS QRQQPTNACF VPAAAITSKT 180 RIRWTEDLHN RFVECVDLLG GAERATPKGI LKLMDIDGLT IFHVKSHLQK YRIARHIPES 240 TEGKSKSERT TDINAIVRLD PKTGMQLVET LRLQLDVQKR LHEQLEVQRN LQLQIEEQGK 300 RLKKMLEQQL KTKESLINDT HDLDNTLQDT PPNDVCTFNI QGFKDTQLYP SNNVVCS |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
6j4k_A | 8e-24 | 179 | 236 | 2 | 59 | Protein PHOSPHATE STARVATION RESPONSE 1 |
6j4k_B | 8e-24 | 179 | 236 | 2 | 59 | Protein PHOSPHATE STARVATION RESPONSE 1 |
6j4r_A | 9e-24 | 179 | 236 | 1 | 58 | Protein PHOSPHATE STARVATION RESPONSE 1 |
6j4r_B | 9e-24 | 179 | 236 | 1 | 58 | Protein PHOSPHATE STARVATION RESPONSE 1 |
6j4r_C | 9e-24 | 179 | 236 | 1 | 58 | Protein PHOSPHATE STARVATION RESPONSE 1 |
6j4r_D | 9e-24 | 179 | 236 | 1 | 58 | Protein PHOSPHATE STARVATION RESPONSE 1 |
6j5b_A | 8e-24 | 179 | 236 | 2 | 59 | Protein PHOSPHATE STARVATION RESPONSE 1 |
6j5b_C | 8e-24 | 179 | 236 | 2 | 59 | Protein PHOSPHATE STARVATION RESPONSE 1 |
6j5b_D | 8e-24 | 179 | 236 | 2 | 59 | Protein PHOSPHATE STARVATION RESPONSE 1 |
6j5b_F | 8e-24 | 179 | 236 | 2 | 59 | Protein PHOSPHATE STARVATION RESPONSE 1 |
6j5b_H | 8e-24 | 179 | 236 | 2 | 59 | Protein PHOSPHATE STARVATION RESPONSE 1 |
6j5b_J | 8e-24 | 179 | 236 | 2 | 59 | Protein PHOSPHATE STARVATION RESPONSE 1 |
Search in ModeBase |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_015387141.2 | 1e-117 | myb family transcription factor PHL5-like | ||||
TrEMBL | A0A2H5NAE0 | 1e-116 | A0A2H5NAE0_CITUN; Uncharacterized protein | ||||
STRING | XP_006483673.1 | 1e-117 | (Citrus sinensis) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Malvids | OGEM5476 | 27 | 48 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT5G06800.1 | 2e-63 | G2-like family protein |