PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Neem_2356_f_1
Organism
Azadirachta indica
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Sapindales; Meliaceae; Azadirachta
Family CAMTA
Protein Properties Length: 336aa    MW: 37617.2 Da    PI: 6.9071
Description CAMTA family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Neem_2356_f_1genomeNGDView Nucleic Acid
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1CG-1165.77.9e-52211364118
           CG-1   4 e.kkrwlkneeiaaiLenfekheltlelktrpksgsliLynrkkvryfrkDGyswkkkkdgktvrEdhekLKvggvevlycyYahseenptfqrrc 98 
                    + k+rwl + e+++iL n++k+++ +++++ p+sg ++L++rk+vr+fr+DG++w+kk+dgktv+E+h+kLKvg+++vl+cy ah+een++fqr c
  Neem_2356_f_1  21 QaKHRWLSAAEVCEILRNYQKFSVDSKPANMPPSGLFFLFDRKVVRFFRNDGHNWRKKRDGKTVKEAHKKLKVGSIDVLHCYSAHGEENENFQRCC 116
                    449********************************************************************************************* PP

           CG-1  99 ywlLeeelekivlvhylevk 118
                    yw+Le e ++ivlvhylevk
  Neem_2356_f_1 117 YWMLEGEISHIVLVHYLEVK 136
                    *****************985 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5143769.89915141IPR005559CG-1 DNA-binding domain
SMARTSM010763.3E-6718136IPR005559CG-1 DNA-binding domain
PfamPF038593.3E-4522135IPR005559CG-1 DNA-binding domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 336 aa     Download sequence    Send to blast
MAETGRFADG NQLDIEKLCS QAKHRWLSAA EVCEILRNYQ KFSVDSKPAN MPPSGLFFLF  60
DRKVVRFFRN DGHNWRKKRD GKTVKEAHKK LKVGSIDVLH CYSAHGEENE NFQRCCYWML  120
EGEISHIVLV HYLEVKGNLT HSSSSLPRSK VNHMNFNYKA KGNTTNVNHI KVAKGTSTYF  180
HETEETMDTA SLNSDKASEN EEDESDNYQG KFSGGPSADF MTPAQADKVM VANNAGLTDK  240
PLIDLNFPCW KEILKDCEDC AQGVGSQPFH PSFSSTQTDT LGNIPKQVHE ILGELSSNRL  300
GKGEELGSHL RGQGGVTGME QHNLCGTYYS IKCLNL
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_006428204.12e-97calmodulin-binding transcription activator 3
TrEMBLA0A067ERP67e-98A0A067ERP6_CITSI; Uncharacterized protein
STRINGXP_006428204.18e-97(Citrus clementina)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM2578023
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G64220.28e-70Calmodulin-binding transcription activator protein with CG-1 and Ankyrin domains