PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Neem_2350_f_4
Organism
Azadirachta indica
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Sapindales; Meliaceae; Azadirachta
Family WRKY
Protein Properties Length: 569aa    MW: 61413.9 Da    PI: 6.1194
Description WRKY family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Neem_2350_f_4genomeNGDView Nucleic Acid
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1WRKY95.73.2e-30249308159
                    ---SS-EEEEEEE--TT-SS-EEEEEE-ST.T---EEEEEE-SSSTTEEEEEEES--SS- CS
           WRKY   1 ldDgynWrKYGqKevkgsefprsYYrCtsa.gCpvkkkversaedpkvveitYegeHnhe 59 
                    ++Dg++WrKYGqK  kg+++pr+YYrCt a gCpv+k+v+r+ ed +++++tYeg+Hnh+
  Neem_2350_f_4 249 MNDGCQWRKYGQKIAKGNPCPRAYYRCTVApGCPVRKQVQRCVEDMSILITTYEGTHNHP 308
                    58***************************99****************************7 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:2.20.25.801.3E-31234308IPR003657WRKY domain
SuperFamilySSF1182904.05E-27242309IPR003657WRKY domain
PROSITE profilePS5081127.978244310IPR003657WRKY domain
SMARTSM007744.5E-37249309IPR003657WRKY domain
PfamPF031066.0E-27250308IPR003657WRKY domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0006952Biological Processdefense response
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 569 aa     Download sequence    Send to blast
MEVLLKMPAA SSSADNCVAK DEKSSAEEGC CQEARKVGIG GQFQEVRYLK LSSPRHENLG  60
DSKEEDELES AKAEMGEVRE ENERLKKMLE QIEKDYKSLQ LKFFDILQRE QPSAKKPRTD  120
STPPPFSQDE IMEPELVSLC LGRSSPSKKE EKTSNNSSSK TSRESDEELK PSLSLALDSK  180
IQPSLELAVS NLTPENSSEE PKEEEAGETW PPSKALKTVR NNGDDEVSQQ SYVKRARVSV  240
RARCDTPTMN DGCQWRKYGQ KIAKGNPCPR AYYRCTVAPG CPVRKQVQRC VEDMSILITT  300
YEGTHNHPLS VSATAMASTT SAAASMLLSG SSTSHSGLSS TATATAATAQ NGLNFNSLYD  360
SSRLKPFYSP NNSSPLFPTI TLDLTNPSSS FSNFSRFSSG FASTPRFPST NLSFSSSSES  420
SMLPTLWGNG YQAFGSYNQT SNGSLLNLGK QSQEHYQPFT DKNQQAASQQ ALAETLTKAI  480
TSNPSLRSVI AAAISTMVGG STNNGEQGGG GDQNLTQNGK ACASSYFNVL SSSSNSQTGS  540
GSLLQSSLPF PILKSNATPT SNVNKDQSS
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
2ayd_A2e-20236309173WRKY transcription factor 1
Search in ModeBase
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_006431098.20.0probable WRKY transcription factor 72
TrEMBLA0A2H5QB830.0A0A2H5QB83_CITUN; Uncharacterized protein
STRINGXP_006482673.10.0(Citrus sinensis)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM29592868
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G15130.13e-91WRKY DNA-binding protein 72