PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Neem_2345_f_3
Organism
Azadirachta indica
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Sapindales; Meliaceae; Azadirachta
Family NAC
Protein Properties Length: 661aa    MW: 74617.9 Da    PI: 6.0733
Description NAC family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Neem_2345_f_3genomeNGDView Nucleic Acid
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1NAM1806.2e-5661331128
            NAM   1 lppGfrFhPtdeelvveyLkkkvegkkleleevikevdiykvePwdLp.k.kvkaeekewyfFskrdkkyatgkrknratksgyWkatgkdkevls 94 
                    lppGfrFhPtdeelv +yLk+k++g+k+el e+i+evd+yk+ePw+Lp k  + +++ ewyfFs+rd+ky++g+r+nratk+gyWkatgkd++v s
  Neem_2345_f_3   6 LPPGFRFHPTDEELVAYYLKRKINGRKIEL-EIIPEVDLYKCEPWELPgKsLLPSKDLEWYFFSPRDRKYPNGSRTNRATKAGYWKATGKDRKVNS 100
                    79****************************.99***************6434555777************************************** PP

            NAM  95 kkgelvglkktLvfykgrapkgektdWvmheyrl 128
                     +++ vg+kktLv+y+grap+g +t+Wvmheyrl
  Neem_2345_f_3 101 -QTRSVGMKKTLVYYRGRAPHGIRTHWVMHEYRL 133
                    .9999***************************98 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF1019417.72E-604139IPR003441NAC domain
PROSITE profilePS5100556.5966156IPR003441NAC domain
PfamPF023657.8E-307133IPR003441NAC domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 661 aa     Download sequence    Send to blast
MAPVSLPPGF RFHPTDEELV AYYLKRKING RKIELEIIPE VDLYKCEPWE LPGKSLLPSK  60
DLEWYFFSPR DRKYPNGSRT NRATKAGYWK ATGKDRKVNS QTRSVGMKKT LVYYRGRAPH  120
GIRTHWVMHE YRLDERECET DSGLQKSAIA PKIGEHYVTS TANQMSHNAN SPANCMDLYS  180
DGLQSSDYRM PYGTCMPSFG NIDGSSSSLN HISETPEPDE KWTQCLSEDP FGFATPPFPT  240
NYATASYHQS KINVASECAK LQHRLSLPPL EVEDFSQIGH TDFKLHHSTS SSREGMNETN  300
FLQEILSVSH TSQELINQSN FQDTWGGNYA YADDFSFLTG EDNHYNSSTV DMSSGRYNEK  360
SFDGLNSRSI EIGDLDEDIK TDQRMVENLR WVGMSSKDLD NKTFMEEHKI VPIEKISSFQ  420
TMESLEVQGD HDTSHNNCVG FNDSELNDFS LGFIDDEPNE NIGDGFASSP SFEVVEEIKV  480
NHGMFVSTRQ VADTFFHKIV PSQIVKVQLN PSAMAHNLLI EKADMKTTSM GIRDNSFLRN  540
LKTFSEGNLF GVACKFIKPW KEIASTVVCT LLLVLMQCFY VGESMENGKG CASDDMNKKM  600
KKSTTRVKGN NKKLEKEGDF LVNIRSSGGD RFILILKKLG LFLTLSLALC SMWANHVVVS  660
T
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
3ulx_A1e-55213311140Stress-induced transcription factor NAC1
Search in ModeBase
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00212DAPTransfer from AT1G65910Download
Motif logo
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_006481957.10.0NAC domain-containing protein 86-like
TrEMBLV4SX980.0V4SX98_9ROSI; Uncharacterized protein
STRINGXP_006481957.10.0(Citrus sinensis)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM101122632
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G65910.11e-148NAC domain containing protein 28