PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Neem_23459_f_1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Sapindales; Meliaceae; Azadirachta
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Family | Nin-like | ||||||||
Protein Properties | Length: 302aa MW: 35033.6 Da PI: 6.2705 | ||||||||
Description | Nin-like family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | RWP-RK | 78.8 | 5.9e-25 | 153 | 202 | 3 | 52 |
RWP-RK 3 keisledlskyFslpikdAAkeLgvclTvLKriCRqyGIkRWPhRkiksl 52 +++s +++s+yF+ +i++AAkeL+v++T+LKr+CR++GI+RWPhRk+ sl Neem_23459_f_1 153 QTLSRKTISQYFYTTIAKAAKELNVGVTLLKRRCRELGIRRWPHRKLLSL 202 7899******************************************9886 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
PROSITE profile | PS51519 | 17.45 | 132 | 223 | IPR003035 | RWP-RK domain |
Pfam | PF02042 | 1.6E-20 | 155 | 202 | IPR003035 | RWP-RK domain |
Sequence ? help Back to Top |
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Protein Sequence Length: 302 aa Download sequence Send to blast |
MGSLQACNKF ELLSKEEDPF SILTQFPSLD FACSENGFSS IDNWQNEMSL PENCFDAIPL 60 MESFPNPLYT STHDSQDNIV PFPKVTTSQG DDEKYGSGIW NELRPLFEPE RQSTEPLCKN 120 IADAFKETRE VDMKTMSRRS KSERKTYNSS KIQTLSRKTI SQYFYTTIAK AAKELNVGVT 180 LLKRRCRELG IRRWPHRKLL SLQNLIRNVQ ELEKEGDPGS EGMMTEVIKV LEREKELIEE 240 IPDSEMEYYT KRLRQACFKN NYKKRRLSEI MNNDDHQLLH STPTGSCYSG YDHHGYGEMK 300 SM |
Binding Motif ? help Back to Top | |||
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Motif ID | Method | Source | Motif file |
MP00234 | DAP | Transfer from AT1G74480 | Download |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_024042709.1 | 2e-79 | protein RKD1-like | ||||
TrEMBL | A0A2H5PSD6 | 2e-67 | A0A2H5PSD6_CITUN; Uncharacterized protein |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Malvids | OGEM3966 | 23 | 56 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT1G18790.1 | 3e-42 | RWP-RK domain-containing protein |