PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Neem_23459_f_1
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Sapindales; Meliaceae; Azadirachta
Family Nin-like
Protein Properties Length: 302aa    MW: 35033.6 Da    PI: 6.2705
Description Nin-like family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Neem_23459_f_1genomeNGDView Nucleic Acid
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1RWP-RK78.85.9e-25153202352
          RWP-RK   3 keisledlskyFslpikdAAkeLgvclTvLKriCRqyGIkRWPhRkiksl 52 
                     +++s +++s+yF+ +i++AAkeL+v++T+LKr+CR++GI+RWPhRk+ sl
  Neem_23459_f_1 153 QTLSRKTISQYFYTTIAKAAKELNVGVTLLKRRCRELGIRRWPHRKLLSL 202
                     7899******************************************9886 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5151917.45132223IPR003035RWP-RK domain
PfamPF020421.6E-20155202IPR003035RWP-RK domain
Sequence ? help Back to Top
Protein Sequence    Length: 302 aa     Download sequence    Send to blast
MGSLQACNKF ELLSKEEDPF SILTQFPSLD FACSENGFSS IDNWQNEMSL PENCFDAIPL  60
MESFPNPLYT STHDSQDNIV PFPKVTTSQG DDEKYGSGIW NELRPLFEPE RQSTEPLCKN  120
IADAFKETRE VDMKTMSRRS KSERKTYNSS KIQTLSRKTI SQYFYTTIAK AAKELNVGVT  180
LLKRRCRELG IRRWPHRKLL SLQNLIRNVQ ELEKEGDPGS EGMMTEVIKV LEREKELIEE  240
IPDSEMEYYT KRLRQACFKN NYKKRRLSEI MNNDDHQLLH STPTGSCYSG YDHHGYGEMK  300
SM
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00234DAPTransfer from AT1G74480Download
Motif logo
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_024042709.12e-79protein RKD1-like
TrEMBLA0A2H5PSD62e-67A0A2H5PSD6_CITUN; Uncharacterized protein
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM39662356
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G18790.13e-42RWP-RK domain-containing protein