PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
|
Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
---|---|---|---|---|---|---|---|---|---|
TF ID | Neem_23413_f_1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Sapindales; Meliaceae; Azadirachta
|
||||||||
Family | NAC | ||||||||
Protein Properties | Length: 244aa MW: 28006.8 Da PI: 7.0744 | ||||||||
Description | NAC family protein | ||||||||
Gene Model |
|
Signature Domain? help Back to Top | |||||||
---|---|---|---|---|---|---|---|
No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | NAM | 95.3 | 9.5e-30 | 5 | 76 | 54 | 127 |
NAM 54 eekewyfFskrdkkyatgkrknratksgyWkatgkdkevlskkgelvglkktLvfykgrapkgektdWvmheyr 127 +ekewyfFs+rd+ky++g+r+nra+ sgyWkatg dk++ + ++ g+kk Lvfy g+apkg kt+W+mheyr Neem_23413_f_1 5 GEKEWYFFSPRDRKYPNGSRPNRAAGSGYWKATGADKPIGK--PKALGIKKALVFYAGKAPKGMKTNWIMHEYR 76 579************************************98..778***************************8 PP |
Protein Features ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Database | Entry ID | E-value | Start | End | InterPro ID | Description |
PROSITE profile | PS51005 | 39.978 | 1 | 104 | IPR003441 | NAC domain |
SuperFamily | SSF101941 | 2.62E-35 | 3 | 104 | IPR003441 | NAC domain |
Pfam | PF02365 | 1.4E-14 | 9 | 76 | IPR003441 | NAC domain |
Gene Ontology ? help Back to Top | ||||||
---|---|---|---|---|---|---|
GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0003677 | Molecular Function | DNA binding |
Sequence ? help Back to Top |
---|
Protein Sequence Length: 244 aa Download sequence Send to blast |
MALYGEKEWY FFSPRDRKYP NGSRPNRAAG SGYWKATGAD KPIGKPKALG IKKALVFYAG 60 KAPKGMKTNW IMHEYRPANV DRSPAGSKNN LRLDDWVLCR LYNKKGRMEK HYPTDQTSVS 120 FPEMEDQKPD VKMALPPNQP HPQPSMISDL LHMDTSESVP RLQTDSSSSE HVLSPEMTVD 180 KEVQSAPKWN NILENGFNDF ELNYMDNLNS FQMPDDPFAP QVEYQMEQLS PLQDIFMILQ 240 QKPF |
3D Structure ? help Back to Top | ||||||
---|---|---|---|---|---|---|
PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
3ulx_A | 3e-49 | 2 | 110 | 64 | 174 | Stress-induced transcription factor NAC1 |
Search in ModeBase |
Annotation -- Protein ? help Back to Top | |||||||
---|---|---|---|---|---|---|---|
Source | Hit ID | E-value | Description | ||||
Refseq | XP_006432090.1 | 1e-133 | NAC domain-containing protein 2 | ||||
Swissprot | Q39013 | 2e-84 | NAC2_ARATH; NAC domain-containing protein 2 | ||||
TrEMBL | V4V0Q3 | 1e-133 | V4V0Q3_9ROSI; Uncharacterized protein | ||||
STRING | XP_006464926.1 | 1e-133 | (Citrus sinensis) | ||||
STRING | XP_006432090.1 | 1e-133 | (Citrus clementina) |
Orthologous Group ? help Back to Top | |||
---|---|---|---|
Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Malvids | OGEM190 | 28 | 276 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Hit ID | E-value | Description | ||||
AT1G01720.1 | 9e-87 | NAC family protein |