PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Home  TFext  BLAST  Prediction  Download  Help  About  Links  PlantRegMap
(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Neem_23313_f_1
Organism
Azadirachta indica
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Sapindales; Meliaceae; Azadirachta
Family bHLH
Protein Properties Length: 326aa    MW: 36393.2 Da    PI: 6.6756
Description bHLH family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Neem_23313_f_1genomeNGDView Nucleic Acid
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HLH45.81.1e-14122173155
                     CHHHHHHHHHHHHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHHH CS
             HLH   1 rrrahnerErrRRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksLq 55 
                     +r++h ++Er+RR+++N+ ++ Lr+l+P++   + ++ + a+i+  A++Y+k+L+
  Neem_23313_f_1 122 QRMTHIAVERNRRKQMNQYLSVLRSLMPPS---YVQRGDQASIVGGAINYVKELE 173
                     79****************************...9******************996 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
CDDcd000834.05E-15120177No hitNo description
Gene3DG3DSA:4.10.280.106.0E-14120177IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SuperFamilySSF474591.57E-17121188IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
PROSITE profilePS5088815.878121172IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
PfamPF000107.7E-12122173IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SMARTSM003534.3E-11127178IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 326 aa     Download sequence    Send to blast
MALEAMVFQE DPFSYGFNKD LHAPGGAETL NSGFGFEKNI AHTESLLQSG GFGFNANSEY  60
SPLSSVMHSI TKSSFPEYLP CGNCFTGELP PVEASPAAEI PSCRRKRRRT RNIKNKEEVE  120
NQRMTHIAVE RNRRKQMNQY LSVLRSLMPP SYVQRGDQAS IVGGAINYVK ELEQLLQALE  180
MHKRIQQQTD DHVHNAESNN FCSLFPGFFS FPQYSTSSAF KNNSLESVVA KKLSAIAEVE  240
VTMAETHANL KVLSKSGYPK QLFKMVTDLL SLGLNILHLN VATFDHAVLY SFSVKKEEGC  300
QLNSVNEIAA AVYEMMGRDQ EEAAFI
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1104108RKRRR
2104109RKRRRT
3122133RMTHIAVERNRR
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_006426315.11e-116transcription factor bHLH94
TrEMBLV4SL101e-114V4SL10_9ROSI; Uncharacterized protein
STRINGXP_006426315.11e-115(Citrus clementina)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM111627102
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G72210.12e-71bHLH family protein