PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Neem_23307_f_1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Sapindales; Meliaceae; Azadirachta
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Family | ARF | ||||||||
Protein Properties | Length: 397aa MW: 44387.5 Da PI: 8.2906 | ||||||||
Description | ARF family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | B3 | 75.6 | 5.6e-24 | 121 | 222 | 1 | 99 |
EEEE-..-HHHHTT-EE--HHH.HTT.......---..--SEEEEEETTS-EEEEEE..EEETTEEEE-TTHHHHHHHHT--TT-EEEEEE-SSS CS B3 1 ffkvltpsdvlksgrlvlpkkfaeeh.......ggkkeesktltledesgrsWevkliyrkksgryvltkGWkeFvkangLkegDfvvFkldgrs 88 f k+lt+sd+++ g +++p+ +ae++ ++ + t+ +d +g++W++++iyr++++r++lt+GW+ Fv+ ++L +gD++vF + + Neem_23307_f_1 121 FAKTLTQSDANNGGGFSVPRYCAETIfprldysADPPVQ--TILAKDVHGETWKFRHIYRGTPRRHLLTTGWSTFVNHKKLVAGDSIVFL--RAE 211 89****************************996555555..89***********************************************..448 PP EE..EEEEE-S CS B3 89 efelvvkvfrk 99 ++ l+v+++r+ Neem_23307_f_1 212 NGDLCVGIRRA 222 8999****997 PP | |||||||
2 | Auxin_resp | 113.6 | 1.8e-37 | 291 | 374 | 1 | 83 |
Auxin_resp 1 aahaastksvFevvYnPrastseFvvkvekvekalkvkvsvGmRfkmafetedsserrl.sGtvvgvsdldpvrWpnSkWrsLk 83 aa+ a+++++Fev+Y+Prast+eF+vk++ v++al+++++ GmRfkmafetedss++++ +Gt+++v+ +dp+ Wp+S+Wr+L+ Neem_23307_f_1 291 AATLAANRQPFEVIYYPRASTPEFCVKASMVRAALQIRWCSGMRFKMAFETEDSSRISWfMGTISSVQVSDPLYWPDSPWRLLQ 374 68899*****************************************************************************97 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
SuperFamily | SSF101936 | 4.84E-30 | 110 | 224 | IPR015300 | DNA-binding pseudobarrel domain |
Gene3D | G3DSA:2.40.330.10 | 4.4E-38 | 112 | 224 | IPR015300 | DNA-binding pseudobarrel domain |
CDD | cd10017 | 3.25E-21 | 120 | 221 | No hit | No description |
Pfam | PF02362 | 3.5E-22 | 121 | 222 | IPR003340 | B3 DNA binding domain |
PROSITE profile | PS50863 | 13.112 | 121 | 223 | IPR003340 | B3 DNA binding domain |
SMART | SM01019 | 1.7E-21 | 121 | 223 | IPR003340 | B3 DNA binding domain |
Pfam | PF06507 | 2.1E-32 | 291 | 374 | IPR010525 | Auxin response factor |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0009725 | Biological Process | response to hormone | ||||
GO:0005634 | Cellular Component | nucleus | ||||
GO:0003677 | Molecular Function | DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 397 aa Download sequence Send to blast |
MITFMDSKEK LKEVEKCLDS QLWHACAGGM VQMPPVNSKV FYFPQGHAEH ACGPVDFRSC 60 QRIPPYVLCR VSAIKFMADP ETDEVYAKIN LIPVSNNEPD FDDDGIVGIR NTESQDKPAS 120 FAKTLTQSDA NNGGGFSVPR YCAETIFPRL DYSADPPVQT ILAKDVHGET WKFRHIYRGT 180 PRRHLLTTGW STFVNHKKLV AGDSIVFLRA ENGDLCVGIR RAKRGIGGGP EVSSGWNGNC 240 VSPYGGFSAF LREDDSKLMR NGNGNVNGSS SNMGTNLMGK GKVRPESVIE AATLAANRQP 300 FEVIYYPRAS TPEFCVKASM VRAALQIRWC SGMRFKMAFE TEDSSRISWF MGTISSVQVS 360 DPLYWPDSPW RLLQIHCKWF TLSFVNKWFG REDGRNC |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
4ldu_A | 1e-76 | 3 | 375 | 32 | 368 | Auxin response factor 5 |
Search in ModeBase |
Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Auxin response factors (ARFs) are transcriptional factors that bind specifically to the DNA sequence 5'-TGTCTC-3' found in the auxin-responsive promoter elements (AuxREs). |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_006481465.1 | 0.0 | auxin response factor 18-like | ||||
Refseq | XP_024955951.1 | 0.0 | auxin response factor 18-like | ||||
Swissprot | Q653H7 | 1e-179 | ARFR_ORYSJ; Auxin response factor 18 | ||||
TrEMBL | A0A067DQ58 | 0.0 | A0A067DQ58_CITSI; Auxin response factor | ||||
TrEMBL | A0A067DQJ1 | 0.0 | A0A067DQJ1_CITSI; Auxin response factor | ||||
STRING | XP_006481465.1 | 0.0 | (Citrus sinensis) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Malvids | OGEM580 | 27 | 130 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT4G30080.1 | 1e-164 | auxin response factor 16 |
Publications ? help Back to Top | |||
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