PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Neem_23265_f_2 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Sapindales; Meliaceae; Azadirachta
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Family | FAR1 | ||||||||
Protein Properties | Length: 144aa MW: 16857.6 Da PI: 9.3611 | ||||||||
Description | FAR1 family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | FAR1 | 55.8 | 1.5e-17 | 3 | 66 | 28 | 90 |
FAR1 28 itkrtfvCskegkreeekkk.tekerrtraetrtgCkaklkvkkekdgkwevtkleleHnHela 90 i+ r+fvCs+eg+r+ ++ +++ +r+ tr gCka++++ ++ gkw+vtk++ eHnH+l Neem_23265_f_2 3 IIGRDFVCSREGFRSAKHALrKDRVLPPRPITREGCKAMIRLAARDGGKWVVTKFVREHNHKLL 66 7889***********9998823333349**********************************96 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
Pfam | PF03101 | 3.3E-15 | 3 | 66 | IPR004330 | FAR1 DNA binding domain |
Sequence ? help Back to Top |
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Protein Sequence Length: 144 aa Download sequence Send to blast |
MAIIGRDFVC SREGFRSAKH ALRKDRVLPP RPITREGCKA MIRLAARDGG KWVVTKFVRE 60 HNHKLLTHCR FPGELPMVNI LSEEEKDRKI QDLYNELQRE RERSGAIQQQ LLMVLKDLEE 120 HAEFMSIRVE DIVNRLKEIE LNGL |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_006478703.1 | 6e-91 | protein FAR-RED ELONGATED HYPOCOTYL 3 | ||||
Refseq | XP_024044852.1 | 6e-91 | protein FAR-RED ELONGATED HYPOCOTYL 3 | ||||
Refseq | XP_024044853.1 | 6e-91 | protein FAR-RED ELONGATED HYPOCOTYL 3 | ||||
TrEMBL | A0A067E5U0 | 1e-89 | A0A067E5U0_CITSI; Uncharacterized protein | ||||
TrEMBL | A0A2H5QLK3 | 1e-89 | A0A2H5QLK3_CITUN; Uncharacterized protein | ||||
TrEMBL | V4T7M3 | 1e-89 | V4T7M3_9ROSI; Uncharacterized protein | ||||
STRING | XP_006478703.1 | 2e-90 | (Citrus sinensis) | ||||
STRING | XP_006443023.1 | 2e-90 | (Citrus clementina) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Malvids | OGEM16776 | 8 | 11 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT3G07500.1 | 1e-31 | FAR1 family protein |