PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Neem_2324_f_1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Sapindales; Meliaceae; Azadirachta
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Family | MYB_related | ||||||||
Protein Properties | Length: 257aa MW: 27824.2 Da PI: 7.3422 | ||||||||
Description | MYB_related family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | Myb_DNA-binding | 59.8 | 6.1e-19 | 12 | 57 | 1 | 47 |
TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHH CS Myb_DNA-binding 1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqky 47 +g+W++eEde l ++v+ +G+++W++I++ ++ gR++k+c++rw + Neem_2324_f_1 12 KGPWSPEEDEALQRLVQNYGPRNWSLISKSIP-GRSGKSCRLRWCNQ 57 79******************************.***********985 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
PROSITE profile | PS51294 | 25.57 | 7 | 62 | IPR017930 | Myb domain |
SMART | SM00717 | 1.1E-16 | 11 | 60 | IPR001005 | SANT/Myb domain |
SuperFamily | SSF46689 | 6.75E-18 | 12 | 63 | IPR009057 | Homeodomain-like |
Gene3D | G3DSA:1.10.10.60 | 3.4E-22 | 12 | 60 | IPR009057 | Homeodomain-like |
Pfam | PF00249 | 1.4E-18 | 12 | 57 | IPR001005 | SANT/Myb domain |
CDD | cd00167 | 2.22E-16 | 14 | 56 | No hit | No description |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0003677 | Molecular Function | DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 257 aa Download sequence Send to blast |
MASTKKDVDR IKGPWSPEED EALQRLVQNY GPRNWSLISK SIPGRSGKSC RLRWCNQLSP 60 ERKCSSMSDD LHEDAINPQP LKRSASVGPG NNVSGLYLNP SSPSGSDLSD SSLPGVAQSP 120 VYRPLLRTGS VALVEASSST TDPPTSLSLS LPGSESCEVS NSASGSALGS NIGLNETQMI 180 QPQVATPPVP VHGQLQNQRE FGYEKQFFNA EFLAVVQEMI RKEVRNYMSG IEHNGLCLQT 240 EAIRNAVVKR IGISKID |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
1gv2_A | 2e-18 | 11 | 83 | 3 | 73 | MYB PROTO-ONCOGENE PROTEIN |
1mse_C | 2e-18 | 11 | 83 | 3 | 73 | C-Myb DNA-Binding Domain |
1msf_C | 2e-18 | 11 | 83 | 3 | 73 | C-Myb DNA-Binding Domain |
Search in ModeBase |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_006434697.1 | 1e-124 | transcription factor MYB44 | ||||
TrEMBL | A0A2H5NHC3 | 1e-123 | A0A2H5NHC3_CITUN; Uncharacterized protein | ||||
STRING | XP_006434697.1 | 1e-123 | (Citrus clementina) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Malvids | OGEM677 | 28 | 135 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT5G67300.1 | 8e-35 | myb domain protein r1 |