PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Neem_2324_f_1
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Sapindales; Meliaceae; Azadirachta
Family MYB_related
Protein Properties Length: 257aa    MW: 27824.2 Da    PI: 7.3422
Description MYB_related family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Neem_2324_f_1genomeNGDView Nucleic Acid
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Myb_DNA-binding59.86.1e-191257147
                     TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHH CS
  Myb_DNA-binding  1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqky 47
                     +g+W++eEde l ++v+ +G+++W++I++ ++ gR++k+c++rw + 
    Neem_2324_f_1 12 KGPWSPEEDEALQRLVQNYGPRNWSLISKSIP-GRSGKSCRLRWCNQ 57
                     79******************************.***********985 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5129425.57762IPR017930Myb domain
SMARTSM007171.1E-161160IPR001005SANT/Myb domain
SuperFamilySSF466896.75E-181263IPR009057Homeodomain-like
Gene3DG3DSA:1.10.10.603.4E-221260IPR009057Homeodomain-like
PfamPF002491.4E-181257IPR001005SANT/Myb domain
CDDcd001672.22E-161456No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 257 aa     Download sequence    Send to blast
MASTKKDVDR IKGPWSPEED EALQRLVQNY GPRNWSLISK SIPGRSGKSC RLRWCNQLSP  60
ERKCSSMSDD LHEDAINPQP LKRSASVGPG NNVSGLYLNP SSPSGSDLSD SSLPGVAQSP  120
VYRPLLRTGS VALVEASSST TDPPTSLSLS LPGSESCEVS NSASGSALGS NIGLNETQMI  180
QPQVATPPVP VHGQLQNQRE FGYEKQFFNA EFLAVVQEMI RKEVRNYMSG IEHNGLCLQT  240
EAIRNAVVKR IGISKID
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1gv2_A2e-181183373MYB PROTO-ONCOGENE PROTEIN
1mse_C2e-181183373C-Myb DNA-Binding Domain
1msf_C2e-181183373C-Myb DNA-Binding Domain
Search in ModeBase
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_006434697.11e-124transcription factor MYB44
TrEMBLA0A2H5NHC31e-123A0A2H5NHC3_CITUN; Uncharacterized protein
STRINGXP_006434697.11e-123(Citrus clementina)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM67728135
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G67300.18e-35myb domain protein r1