PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Neem_2314_f_2
Organism
Azadirachta indica
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Sapindales; Meliaceae; Azadirachta
Family NAC
Protein Properties Length: 335aa    MW: 38702.1 Da    PI: 4.7151
Description NAC family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Neem_2314_f_2genomeNGDView Nucleic Acid
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1NAM52.12.1e-162212532128
            NAM  32 ev.ikevdiykv.ePwdLpk..kvka....eekewyfFskrdkkyatgkrknratksgyWkatgkdkevlsk..kgelvglkktLvfykgrapkge 117
                    ++ +k +d+y   ePwd+ +     +    e++e+yfF++ +k++++g+r  r++ sg+W+a    +ev+++  +++  g k+ + + +g++++ +
  Neem_2314_f_2  22 QMdVKVCDLYGDqEPWDIWNfyG--GndllEDEELYFFTQLKKRTPNGSRYIRKIGSGVWQAEDGAREVKASggSKQILGFKRRFRYENGDNSE-Q 114
                    33377788886449****74231..234557889************************************997666779********9888887.8 PP

            NAM 118 ktdWvmheyrl 128
                    +  W+mh++++
  Neem_2314_f_2 115 NGGWIMHQFTI 125
                    9********86 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5100520.3171149IPR003441NAC domain
PfamPF023658.7E-826124IPR003441NAC domain
SuperFamilySSF1019414.18E-1933149IPR003441NAC domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 335 aa     Download sequence    Send to blast
MQDNCICKNV YHGNNKINSL KQMDVKVCDL YGDQEPWDIW NFYGGNDLLE DEELYFFTQL  60
KKRTPNGSRY IRKIGSGVWQ AEDGAREVKA SGGSKQILGF KRRFRYENGD NSEQNGGWIM  120
HQFTINPLLL GSRYSHNAMD YVLCCVKRKE RVQNKENADL GKKQRKCKQI VEKNESIGEE  180
TGRKRRLKQA ETSNKNDDKW DLNKPLKAER GAILVPQNRP IELPCANNVL KVLEFEAWTE  240
TERNFNTFHV EDLFSSNIQS GEVDCTQYQI SEGFECVQNQ HLMGEQGGGE EEEALQVVEY  300
EAEAEPQLDF EESFSSMDDN FDLILTSTDL EFLKQ
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1181188GRKRRLKQ
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM1918526
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G01540.26e-11NAC with transmembrane motif1