PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Neem_23091_f_1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Sapindales; Meliaceae; Azadirachta
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Family | NAC | ||||||||
Protein Properties | Length: 166aa MW: 19341.9 Da PI: 5.8548 | ||||||||
Description | NAC family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | NAM | 55.1 | 2.5e-17 | 16 | 136 | 7 | 128 |
NAM 7 FhPtdeelvveyLkkkvegkk.leleevikevdiykvePwdLp.kkvkaeekewyfFskrdkkyatgkrknratksgyWkatgkdkevlskkgel 99 F+P++e++ + L+ kv+g ++++++ke+++ k++P++L+ +++++ +++yfF++ + + + r +k g+W+ + e +s++g Neem_23091_f_1 16 FSPSEEQIF-HLLQLKVSGVAgRPEFDHMKEIELDKYKPRELQsVAYESGGEKYYFFAPIYQ---DEIVADRRAKGGIWEVMIS--EFKSRDGYP 104 99**99988.99*****99887777799**************95577777888899998755...45567777799****9877..56666799* PP NAM 100 vglkktLvfy...kgrapkgektdWvmheyrl 128 +k+ L++y + +a+++++tdW+m+ey+l Neem_23091_f_1 105 FAMKTRLIYYtqgQDTASQPVETDWCMKEYTL 136 **********76556888999*********97 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
PROSITE profile | PS51005 | 20.875 | 9 | 155 | IPR003441 | NAC domain |
Pfam | PF02365 | 9.0E-9 | 16 | 136 | IPR003441 | NAC domain |
SuperFamily | SSF101941 | 1.7E-17 | 16 | 155 | IPR003441 | NAC domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0003677 | Molecular Function | DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 166 aa Download sequence Send to blast |
MRQLPRNPSP VQLEAFSPSE EQIFHLLQLK VSGVAGRPEF DHMKEIELDK YKPRELQSVA 60 YESGGEKYYF FAPIYQDEIV ADRRAKGGIW EVMISEFKSR DGYPFAMKTR LIYYTQGQDT 120 ASQPVETDWC MKEYTLGEGK NNEESSWALC VVYLKRSPQR VRNLNL |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT3G17730.1 | 1e-10 | NAC domain containing protein 57 |