PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Neem_23003_f_1

Organism

Azadirachta indica

Taxonomic ID

124943

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Sapindales; Meliaceae; Azadirachta

Family

GRAS

Protein Properties

Length: 137aa MW: 16064.1 Da PI: 6.2352

Description

GRAS family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Neem_23003_f_1	genome	NGD	View Nucleic Acid

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	GRAS	169	3.8e-52	1	136	239	373
GRAS 239 vvvveqeadhnsesFlerflealeyysalfdsleaklpreseerikvErellgreivnvvacegaerrerhetlekWrerleeaGFkpvplseka 333 ++++e+ea+hn++ Fl+rf+ea+++y+a+fdslea+lp++s+er vE+ ++greiv++va+eg++rrerhe++e+W++ l+++GF+++pls + Neem_23003_f_1 1 MTIAEREANHNHPLFLQRFVEAVDHYTAIFDSLEATLPPNSRERLAVEQIWFGREIVEIVAAEGDNRRERHERYESWEMILRSSGFSNLPLSAYS 95 799****************************************************************************************** PP GRAS 334 akqaklllrkvk.sdgyrveeesgslvlgWkdrpLvsvSaW 373 +qaklllr ++ s+gy+++ ++s++lgW++r+L+svS+W Neem_23003_f_1 96 LSQAKLLLRLHYpSEGYQLQILNNSFFLGWQNRALFSVSSW 136 *************************************** PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
Pfam	PF03514	1.3E-49	1	136	IPR005202	Transcription factor GRAS
PROSITE profile	PS50985	23.504	1	116	IPR005202	Transcription factor GRAS

Sequence ? help Back to Top
Protein Sequence Length: 137 aa Download sequence Send to blast
MTIAEREANH NHPLFLQRFV EAVDHYTAIF DSLEATLPPN SRERLAVEQI WFGREIVEIV 60 AAEGDNRRER HERYESWEMI LRSSGFSNLP LSAYSLSQAK LLLRLHYPSE GYQLQILNNS 120 FFLGWQNRAL FSVSSWH

3D Structure ? help Back to Top

PDB ID	Evalue	Query Start	Query End	Hit Start	Hit End	Description
5b3g_A	1e-22	1	136	246	378	Protein SCARECROW
5b3h_A	1e-22	1	136	245	377	Protein SCARECROW
5b3h_D	1e-22	1	136	245	377	Protein SCARECROW
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Functional Description ? help Back to Top
Source	Description
UniProt	Probable transcription factor required for axillary (lateral) shoot meristem formation during vegetative development. Seems to act upstream of REVOLUTA. {ECO:0000269\|PubMed:12730136}.

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_006452790.1	3e-85	scarecrow-like protein 18
Refseq	XP_006475101.1	4e-85	scarecrow-like protein 18
Swissprot	Q9ZWC5	2e-64	SCL18_ARATH; Scarecrow-like protein 18
TrEMBL	A0A067GEP9	6e-84	A0A067GEP9_CITSI; Uncharacterized protein
TrEMBL	A0A438FL43	2e-84	A0A438FL43_VITVI; Scarecrow-like protein 18
STRING	XP_006475101.1	1e-84	(Citrus sinensis)
STRING	XP_006452790.1	1e-84	(Citrus clementina)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Malvids	OGEM11329	27	33

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT1G55580.1	7e-67	GRAS family protein

Publications ? help Back to Top
Zhang B, et al. Novel function of a putative MOC1 ortholog associated with spikelet number per spike in common wheat. Sci Rep, 2015. 5: p. 12211 [PMID:26197925]