PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Neem_22956_f_1
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Sapindales; Meliaceae; Azadirachta
Family GRAS
Protein Properties Length: 455aa    MW: 52333.9 Da    PI: 8.5289
Description GRAS family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Neem_22956_f_1genomeNGDView Nucleic Acid
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1GRAS364.61.4e-111684372373
            GRAS   2 velLlecAeavssgdlelaqalLarlselaspdgdpmqRlaayfteALaarlarsvselykalppsetseknsseelaalklfsevsPilkfshl 96 
                      +lLl cA+av+++d + + +lL ++++++sp gd +qRla++f++ L+arl++++ ++y  l+ +++s    +e ++a++++ e+ P+ k++ +
  Neem_22956_f_1  68 STLLLLCAQAVAADDRRTTGELLRQIRQHSSPFGDGTQRLAHCFANSLEARLVGTGVQIYTDLSFKRKS---PAELIKAYQVYIEALPFNKIAII 159
                     579************************************************************999998...89********************* PP

            GRAS  97 taNqaIleavegeervHiiDfdisqGlQWpaLlqaLasRpegppslRiTgvgspesg..skeeleetgerLakfAeelgvpfefnvlvakrledl 189
                      aN +I+e +e+++++HiiDf+i +G+QWpaL+  L++R++gpp+lR+Tg++ p +g   +e++eetg+rLa+++e+++vpfe+n+ +ak++e++
  Neem_22956_f_1 160 FANDTIMELAEKATTLHIIDFGIWHGFQWPALIYRLSKRNSGPPKLRMTGIDFPLPGfrPAERVEETGRRLARYCERFKVPFEYNA-IAKKWENI 253
                     ******************************************************99999***************************.7******* PP

            GRAS 190 eleeLrvkpgEalaVnlvlqlhrlldesvsleserdevLklvkslsPkvvvvveqeadhnsesFlerflealeyysalfdsleaklpreseerik 284
                     +le+L++k +E+laVn+ ++l++llde+v ++s++d+vL+l+++++P++++++  + + ns+ Fl+rf eal y+sa+fd +e+++pre+e r +
  Neem_22956_f_1 254 KLEDLKIKDNEVLAVNCLYRLKNLLDETVVVNSPKDAVLNLIRRTNPDIFIHAVLNGSFNSPFFLTRFREALFYFSAMFDVWEETVPREDEMRLM 348
                     *********************************************************************************************** PP

            GRAS 285 vErellgreivnvvacegaerrerhetlekWrerleeaGFkpvplsekaakqaklllrkvksdgyrveeesgslvlgWkdrpLvsvSaW 373
                      E+e+ gre+ nvvaceg er+er et+++W  r ++aGF+++pl+ + +k+ + +l+  +s  ++ +e+++++++gWk++ L++ S W
  Neem_22956_f_1 349 FEEEFYGREAINVVACEGLERVERPETYKQWIVRNTRAGFRQLPLDPQLMKKLRGMLKAGYSSDFTFDEDKHWMLQGWKGKILYASSTW 437
                     ***********************************************************99888************************* PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5098564.83441418IPR005202Transcription factor GRAS
PfamPF035144.8E-10968437IPR005202Transcription factor GRAS
Sequence ? help Back to Top
Protein Sequence    Length: 455 aa     Download sequence    Send to blast
MDESELSEMF DRVLIGNERK ESVCVLDETA QNYGTKKTQQ QNRQTNGSSG EKNRAKKPAN  60
KNDVVDLSTL LLLCAQAVAA DDRRTTGELL RQIRQHSSPF GDGTQRLAHC FANSLEARLV  120
GTGVQIYTDL SFKRKSPAEL IKAYQVYIEA LPFNKIAIIF ANDTIMELAE KATTLHIIDF  180
GIWHGFQWPA LIYRLSKRNS GPPKLRMTGI DFPLPGFRPA ERVEETGRRL ARYCERFKVP  240
FEYNAIAKKW ENIKLEDLKI KDNEVLAVNC LYRLKNLLDE TVVVNSPKDA VLNLIRRTNP  300
DIFIHAVLNG SFNSPFFLTR FREALFYFSA MFDVWEETVP REDEMRLMFE EEFYGREAIN  360
VVACEGLERV ERPETYKQWI VRNTRAGFRQ LPLDPQLMKK LRGMLKAGYS SDFTFDEDKH  420
WMLQGWKGKI LYASSTWLPA EDLTSGRGRL ANSVS
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5b3g_A1e-517443926380Protein SCARECROW
5b3h_A1e-517443925379Protein SCARECROW
5b3h_D1e-517443925379Protein SCARECROW
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtProbable transcription factor involved in plant development. {ECO:0000250}.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_021647638.10.0scarecrow-like protein 14
RefseqXP_021647651.10.0scarecrow-like protein 14 isoform X3
SwissprotQ9XE580.0SCL14_ARATH; Scarecrow-like protein 14
TrEMBLA0A2C9WLQ00.0A0A2C9WLQ0_MANES; Uncharacterized protein
STRINGcassava4.1_002197m0.0(Manihot esculenta)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM35827189
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G07530.10.0SCARECROW-like 14
Publications ? help Back to Top
  1. Duarte JM, et al.
    Expression pattern shifts following duplication indicative of subfunctionalization and neofunctionalization in regulatory genes of Arabidopsis.
    Mol. Biol. Evol., 2006. 23(2): p. 469-78
    [PMID:16280546]