PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
|
Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
---|---|---|---|---|---|---|---|---|---|
TF ID | Neem_22956_f_1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Sapindales; Meliaceae; Azadirachta
|
||||||||
Family | GRAS | ||||||||
Protein Properties | Length: 455aa MW: 52333.9 Da PI: 8.5289 | ||||||||
Description | GRAS family protein | ||||||||
Gene Model |
|
Signature Domain? help Back to Top | |||||||
---|---|---|---|---|---|---|---|
No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | GRAS | 364.6 | 1.4e-111 | 68 | 437 | 2 | 373 |
GRAS 2 velLlecAeavssgdlelaqalLarlselaspdgdpmqRlaayfteALaarlarsvselykalppsetseknsseelaalklfsevsPilkfshl 96 +lLl cA+av+++d + + +lL ++++++sp gd +qRla++f++ L+arl++++ ++y l+ +++s +e ++a++++ e+ P+ k++ + Neem_22956_f_1 68 STLLLLCAQAVAADDRRTTGELLRQIRQHSSPFGDGTQRLAHCFANSLEARLVGTGVQIYTDLSFKRKS---PAELIKAYQVYIEALPFNKIAII 159 579************************************************************999998...89********************* PP GRAS 97 taNqaIleavegeervHiiDfdisqGlQWpaLlqaLasRpegppslRiTgvgspesg..skeeleetgerLakfAeelgvpfefnvlvakrledl 189 aN +I+e +e+++++HiiDf+i +G+QWpaL+ L++R++gpp+lR+Tg++ p +g +e++eetg+rLa+++e+++vpfe+n+ +ak++e++ Neem_22956_f_1 160 FANDTIMELAEKATTLHIIDFGIWHGFQWPALIYRLSKRNSGPPKLRMTGIDFPLPGfrPAERVEETGRRLARYCERFKVPFEYNA-IAKKWENI 253 ******************************************************99999***************************.7******* PP GRAS 190 eleeLrvkpgEalaVnlvlqlhrlldesvsleserdevLklvkslsPkvvvvveqeadhnsesFlerflealeyysalfdsleaklpreseerik 284 +le+L++k +E+laVn+ ++l++llde+v ++s++d+vL+l+++++P++++++ + + ns+ Fl+rf eal y+sa+fd +e+++pre+e r + Neem_22956_f_1 254 KLEDLKIKDNEVLAVNCLYRLKNLLDETVVVNSPKDAVLNLIRRTNPDIFIHAVLNGSFNSPFFLTRFREALFYFSAMFDVWEETVPREDEMRLM 348 *********************************************************************************************** PP GRAS 285 vErellgreivnvvacegaerrerhetlekWrerleeaGFkpvplsekaakqaklllrkvksdgyrveeesgslvlgWkdrpLvsvSaW 373 E+e+ gre+ nvvaceg er+er et+++W r ++aGF+++pl+ + +k+ + +l+ +s ++ +e+++++++gWk++ L++ S W Neem_22956_f_1 349 FEEEFYGREAINVVACEGLERVERPETYKQWIVRNTRAGFRQLPLDPQLMKKLRGMLKAGYSSDFTFDEDKHWMLQGWKGKILYASSTW 437 ***********************************************************99888************************* PP |
Protein Features ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Database | Entry ID | E-value | Start | End | InterPro ID | Description |
PROSITE profile | PS50985 | 64.834 | 41 | 418 | IPR005202 | Transcription factor GRAS |
Pfam | PF03514 | 4.8E-109 | 68 | 437 | IPR005202 | Transcription factor GRAS |
Sequence ? help Back to Top |
---|
Protein Sequence Length: 455 aa Download sequence Send to blast |
MDESELSEMF DRVLIGNERK ESVCVLDETA QNYGTKKTQQ QNRQTNGSSG EKNRAKKPAN 60 KNDVVDLSTL LLLCAQAVAA DDRRTTGELL RQIRQHSSPF GDGTQRLAHC FANSLEARLV 120 GTGVQIYTDL SFKRKSPAEL IKAYQVYIEA LPFNKIAIIF ANDTIMELAE KATTLHIIDF 180 GIWHGFQWPA LIYRLSKRNS GPPKLRMTGI DFPLPGFRPA ERVEETGRRL ARYCERFKVP 240 FEYNAIAKKW ENIKLEDLKI KDNEVLAVNC LYRLKNLLDE TVVVNSPKDA VLNLIRRTNP 300 DIFIHAVLNG SFNSPFFLTR FREALFYFSA MFDVWEETVP REDEMRLMFE EEFYGREAIN 360 VVACEGLERV ERPETYKQWI VRNTRAGFRQ LPLDPQLMKK LRGMLKAGYS SDFTFDEDKH 420 WMLQGWKGKI LYASSTWLPA EDLTSGRGRL ANSVS |
3D Structure ? help Back to Top | ||||||
---|---|---|---|---|---|---|
PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
5b3g_A | 1e-51 | 74 | 439 | 26 | 380 | Protein SCARECROW |
5b3h_A | 1e-51 | 74 | 439 | 25 | 379 | Protein SCARECROW |
5b3h_D | 1e-51 | 74 | 439 | 25 | 379 | Protein SCARECROW |
Search in ModeBase |
Functional Description ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Source | Description | |||||
UniProt | Probable transcription factor involved in plant development. {ECO:0000250}. |
Annotation -- Protein ? help Back to Top | |||||||
---|---|---|---|---|---|---|---|
Source | Hit ID | E-value | Description | ||||
Refseq | XP_021647638.1 | 0.0 | scarecrow-like protein 14 | ||||
Refseq | XP_021647651.1 | 0.0 | scarecrow-like protein 14 isoform X3 | ||||
Swissprot | Q9XE58 | 0.0 | SCL14_ARATH; Scarecrow-like protein 14 | ||||
TrEMBL | A0A2C9WLQ0 | 0.0 | A0A2C9WLQ0_MANES; Uncharacterized protein | ||||
STRING | cassava4.1_002197m | 0.0 | (Manihot esculenta) |
Orthologous Group ? help Back to Top | |||
---|---|---|---|
Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Malvids | OGEM358 | 27 | 189 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Hit ID | E-value | Description | ||||
AT1G07530.1 | 0.0 | SCARECROW-like 14 |
Publications ? help Back to Top | |||
---|---|---|---|
|