PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Home  TFext  BLAST  Prediction  Download  Help  About  Links  PlantRegMap
(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Neem_22908_f_1
Organism
Azadirachta indica
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Sapindales; Meliaceae; Azadirachta
Family HSF
Protein Properties Length: 345aa    MW: 39204.8 Da    PI: 4.8927
Description HSF family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Neem_22908_f_1genomeNGDView Nucleic Acid
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HSF_DNA-bind118.15.1e-37451362102
                     HHHHHHHHHCTGGGTTTSEESSSSSEEEES-HHHHHHHTHHHHSTT--HHHHHHHHHHTTEEE---SSBTTTTXTTSEEEEESXXXXXXXXXXXX CS
    HSF_DNA-bind   2 FlkklyeiledeelkeliswsengnsfvvldeeefakkvLpkyFkhsnfaSFvRQLnmYgFkkvkdeekkskskekiweFkhksFkkgkkellek 96 
                     Fl+k+ye+++d+++++++sws+ g sfvv+d++ f++++Lp+yFkh+nf+SFvRQLn+YgF+k++ ++         weF+++ F++g+++ll++
  Neem_22908_f_1  45 FLSKTYEMVDDPNTNHIVSWSRGGGSFVVWDPHAFSTDLLPRYFKHNNFSSFVRQLNTYGFRKIDPDR---------WEFSNEGFRRGQRHLLKS 130
                     9****************************************************************999.........****************** PP

                     XXXXXX CS
    HSF_DNA-bind  97 ikrkks 102
                     ikr+k 
  Neem_22908_f_1 131 IKRRKA 136
                     ***986 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:1.10.10.101.9E-4041134IPR011991Winged helix-turn-helix DNA-binding domain
SMARTSM004154.9E-6341134IPR000232Heat shock factor (HSF)-type, DNA-binding
SuperFamilySSF467859.25E-3841134IPR011991Winged helix-turn-helix DNA-binding domain
PfamPF004471.8E-3345134IPR000232Heat shock factor (HSF)-type, DNA-binding
PRINTSPR000561.9E-204568IPR000232Heat shock factor (HSF)-type, DNA-binding
PRINTSPR000561.9E-208395IPR000232Heat shock factor (HSF)-type, DNA-binding
PROSITE patternPS00434084108IPR000232Heat shock factor (HSF)-type, DNA-binding
PRINTSPR000561.9E-2096108IPR000232Heat shock factor (HSF)-type, DNA-binding
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 345 aa     Download sequence    Send to blast
MNPFYIVKEE DPGASSSQLG DDRRPAMMPP PQPKEGLHDT GPPPFLSKTY EMVDDPNTNH  60
IVSWSRGGGS FVVWDPHAFS TDLLPRYFKH NNFSSFVRQL NTYGFRKIDP DRWEFSNEGF  120
RRGQRHLLKS IKRRKAPSQP LPPPQALGPC VEVGRFGLDG EVERLNTRAY LQAMEQRLQG  180
TEKKQQQMMS FLARAMQNPA FLQQLVQQKE KRKELEEAMT KKRRRPIDQG PIGAVGGESS  240
RSGEGMNSIK SEPLEYGDYG FGMSELEALA LEMQGYGRTR REREEGQEEI VPPESGDREL  300
DEGFWEELLN ERFEGELDIP GDEGCDDEDV NGLADRFGYL GSSPK
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
2ldu_A2e-244313418120Heat shock factor protein 1
5d5u_B2e-244313427129Heat shock factor protein 1
5d5v_B2e-244313427129Heat shock factor protein 1
5d5v_D2e-244313427129Heat shock factor protein 1
5hdg_A2e-24431348110Heat shock factor protein 1
5hdn_A2e-24431348110Heat shock factor protein 1
5hdn_B2e-24431348110Heat shock factor protein 1
5hdn_C2e-24431348110Heat shock factor protein 1
5hdn_D2e-24431348110Heat shock factor protein 1
Search in ModeBase
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1127133LKSIKRR
2210224KRKELEEAMTKKRRR
Functional Description ? help Back to Top
Source Description
UniProtTranscriptional activator that specifically binds DNA sequence 5'-AGAAnnTTCT-3' known as heat shock promoter elements (HSE).
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_006479647.10.0heat stress transcription factor A-7a
RefseqXP_006479648.10.0heat stress transcription factor A-7a
RefseqXP_024044201.10.0heat stress transcription factor A-7a
SwissprotQ9LUH81e-110HFA6B_ARATH; Heat stress transcription factor A-6b
TrEMBLA0A2H5PTQ90.0A0A2H5PTQ9_CITUN; Uncharacterized protein
STRINGXP_006479647.10.0(Citrus sinensis)
STRINGXP_006443978.10.0(Citrus clementina)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM12562899
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G22830.11e-107heat shock transcription factor A6B