PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Neem_22839_f_1

Organism

Azadirachta indica

Taxonomic ID

124943

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Sapindales; Meliaceae; Azadirachta

Family

NAC

Protein Properties

Length: 249aa MW: 28571.6 Da PI: 4.7494

Description

NAC family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Neem_22839_f_1	genome	NGD	View Nucleic Acid

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	NAM	176.5	7.5e-55	6	133	1	128
NAM 1 lppGfrFhPtdeelvveyLkkkvegkkleleevikevdiykvePwdLp.k.kvkaeekewyfFskrdkkyatgkrknratksgyWkatgkdkevl 93 lppGfrFhPtdeelv++yLk+k++g+++el ++i+evd+yk+ePw+L k + +++ ewyfF +rd+ky++g r+nrat++gyWk+tgkd++v+ Neem_22839_f_1 6 LPPGFRFHPTDEELVNYYLKRKINGQEIEL-DIIPEVDLYKCEPWELAeKsFLPSRDPEWYFFGPRDRKYPNGFRTNRATRAGYWKSTGKDRRVT 99 79**************************.99**********84335556888*********************************** PP NAM 94 skkgelvglkktLvfykgrapkgektdWvmheyrl 128 +++++g+kktLv+y+grap+g +tdWvmheyrl Neem_22839_f_1 100 Y-QNRAIGMKKTLVYYRGRAPQGIRTDWVMHEYRL 133 .8999**************************98 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
SuperFamily	SSF101941	9.81E-63	4	157	IPR003441	NAC domain
PROSITE profile	PS51005	59.945	6	157	IPR003441	NAC domain
Pfam	PF02365	3.0E-30	7	133	IPR003441	NAC domain

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0006355	Biological Process	regulation of transcription, DNA-templated
GO:0003677	Molecular Function	DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 249 aa Download sequence Send to blast
MAPVGLPPGF RFHPTDEELV NYYLKRKING QEIELDIIPE VDLYKCEPWE LAEKSFLPSR 60 DPEWYFFGPR DRKYPNGFRT NRATRAGYWK STGKDRRVTY QNRAIGMKKT LVYYRGRAPQ 120 GIRTDWVMHE YRLDDKECDD ISAGIQDSYA LCRVFKKNGI CSEMEDQQGQ SSSTSLMETS 180 QSVINNEYDQ TMSPDVNPLT SSSCCIDEDD KDDSWMQFIT DDPWCSSNSA SGSASAHGGE 240 EVSHFAFTH

3D Structure ? help Back to Top

PDB ID	Evalue	Query Start	Query End	Hit Start	Hit End	Description
3ulx_A	4e-55	2	158	11	169	Stress-induced transcription factor NAC1
Search in ModeBase

Functional Description ? help Back to Top
Source	Description
UniProt	Transcription factor directing sieve element enucleation and cytosol degradation. Not required for formation of lytic vacuoles. Regulates, with NAC045, the transcription of NEN1, NEN2, NEN3, NEN4, RTM1, RTM2, UBP16, PLDZETA, ABCB10 and At1g26450. {ECO:0000269\|PubMed:25081480}.

Binding Motif ? help Back to Top
Motif ID	Method	Source	Motif file
MP00363	DAP	Transfer from AT3G17730	Download

Annotation -- Nucleotide ? help Back to Top
Source	Hit ID	E-value	Description
GenBank	AP015044	3e-40	AP015044.1 Vigna angularis var. angularis DNA, chromosome 11, almost complete sequence, cultivar: Shumari.

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_006441340.1	1e-150	NAC domain-containing protein 86
Refseq	XP_006478130.1	1e-150	NAC domain-containing protein 86 isoform X2
Swissprot	Q9FFI5	2e-93	NAC86_ARATH; NAC domain-containing protein 86
TrEMBL	A0A067DFX7	1e-149	A0A067DFX7_CITSI; Uncharacterized protein
TrEMBL	A0A2H5QJA7	1e-149	A0A2H5QJA7_CITUN; Uncharacterized protein
TrEMBL	V4TS54	1e-149	V4TS54_9ROSI; Uncharacterized protein
STRING	XP_006478130.1	1e-150	(Citrus sinensis)
STRING	XP_006441340.1	1e-150	(Citrus clementina)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Malvids	OGEM8504	28	39

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT3G17730.1	1e-126	NAC domain containing protein 57

Publications ? help Back to Top
Duarte JM, et al. Expression pattern shifts following duplication indicative of subfunctionalization and neofunctionalization in regulatory genes of Arabidopsis. Mol. Biol. Evol., 2006. 23(2): p. 469-78 [PMID:16280546]