PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Neem_22733_f_1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Sapindales; Meliaceae; Azadirachta
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Family | C3H | ||||||||
Protein Properties | Length: 247aa MW: 28823.9 Da PI: 10.7763 | ||||||||
Description | C3H family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | zf-CCCH | 21.8 | 3.3e-07 | 7 | 30 | 1 | 26 |
--S---SGGGGTS--TTTTT-SS-SS CS zf-CCCH 1 yktelCrffartGtCkyGdrCkFaHg 26 ykt+lC ++r G C + ++C+FaHg Neem_22733_f_1 7 YKTKLCVLYQR-GRCTR-PTCSFAHG 30 9**********.*****.*******9 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
SuperFamily | SSF90229 | 7.06E-5 | 4 | 35 | IPR000571 | Zinc finger, CCCH-type |
Gene3D | G3DSA:4.10.1000.10 | 1.9E-9 | 5 | 35 | IPR000571 | Zinc finger, CCCH-type |
PROSITE profile | PS50103 | 12.549 | 6 | 32 | IPR000571 | Zinc finger, CCCH-type |
SMART | SM00356 | 0.0044 | 6 | 31 | IPR000571 | Zinc finger, CCCH-type |
Pfam | PF00642 | 2.9E-4 | 7 | 30 | IPR000571 | Zinc finger, CCCH-type |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0046872 | Molecular Function | metal ion binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 247 aa Download sequence Send to blast |
MVERKLYKTK LCVLYQRGRC TRPTCSFAHG DAELQRSFRS HIGGRNSGVG DLRDKLDRRH 60 SPRRSYSPGR DARDRQKLRG HSPSRSLEKK SDRKRRKTQH LDGQGEFSRS LKISDGIEDR 120 VKEGKATPSG SKVVLQEQNH VQLKEVQLVI NRLEHQKHQL ESYVEEKVQE ADILSSRIKE 180 LETQLQQEKE ECRRIASKIK KFVKAHNHHS RIQAELMRQV MIFFEPLTSV QHIGQKLDFR 240 SWVISLA |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_006447506.1 | 1e-101 | zinc finger CCCH domain-containing protein 13 | ||||
Refseq | XP_006469713.1 | 1e-101 | zinc finger CCCH domain-containing protein 13 isoform X1 | ||||
TrEMBL | A0A067F165 | 2e-99 | A0A067F165_CITSI; Uncharacterized protein (Fragment) | ||||
TrEMBL | V4UEP2 | 2e-99 | V4UEP2_9ROSI; Uncharacterized protein | ||||
STRING | XP_006469713.1 | 1e-100 | (Citrus sinensis) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Malvids | OGEM10069 | 21 | 27 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT3G21810.1 | 8e-42 | C3H family protein |