PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Neem_22647_f_1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Sapindales; Meliaceae; Azadirachta
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Family | B3 | ||||||||
Protein Properties | Length: 229aa MW: 26086.4 Da PI: 10.3255 | ||||||||
Description | B3 family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | B3 | 50.3 | 4.4e-16 | 131 | 220 | 1 | 98 |
EEEE-..-HHHHTT-EE--HHH.HTT---..--SEEEEEETTS-EEEEEE..EEETTEEEE-TTHHHHHHHHT--TT-EEEEEE-SSSEE..EEE CS B3 1 ffkvltpsdvlksgrlvlpkkfaeehggkkeesktltledesgrsWevkliyrkksgryvltkGWkeFvkangLkegDfvvFkldgrsefelvvk 95 f+k +++s+v+ +l lp f++e+ +k ++ ++l de+g ++ + rk++ l++GWk F+ a+gL +gD +vF+l++++ f +v Neem_22647_f_1 131 FVKSMLKSHVTGGFWLGLPGYFCRENL-PK-SDDVISLIDEEGDEYPTIYLARKTG----LSGGWKAFAVAHGLVDGDALVFQLIRSMAF--KVY 217 89************************4.32.4458***************656665....*************************99999..888 PP EE- CS B3 96 vfr 98 ++r Neem_22647_f_1 218 IIR 220 877 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
SuperFamily | SSF101936 | 1.37E-22 | 124 | 220 | IPR015300 | DNA-binding pseudobarrel domain |
Gene3D | G3DSA:2.40.330.10 | 3.4E-19 | 124 | 220 | IPR015300 | DNA-binding pseudobarrel domain |
CDD | cd10017 | 2.58E-25 | 129 | 220 | No hit | No description |
SMART | SM01019 | 8.5E-24 | 131 | 222 | IPR003340 | B3 DNA binding domain |
PROSITE profile | PS50863 | 12.28 | 131 | 222 | IPR003340 | B3 DNA binding domain |
Pfam | PF02362 | 1.1E-13 | 131 | 220 | IPR003340 | B3 DNA binding domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0003677 | Molecular Function | DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 229 aa Download sequence Send to blast |
MVTAKAKPSY EDCRLRRLEE NKKRMEALNL PMLSQALRKK PSFKSSPMKQ VKPRTVEKKA 60 IALSLRRSSR VAKMPAPVYN EVNRVRVEIP RRIYNRRDLS NRVYASDAAR ADAIEKAEKL 120 ESRLDTECPT FVKSMLKSHV TGGFWLGLPG YFCRENLPKS DDVISLIDEE GDEYPTIYLA 180 RKTGLSGGWK AFAVAHGLVD GDALVFQLIR SMAFKVYIIR GTEEVYLKL |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_006434799.1 | 1e-122 | B3 domain-containing protein At5g42700 isoform X1 | ||||
Swissprot | Q9FMZ4 | 6e-71 | Y5270_ARATH; B3 domain-containing protein At5g42700 | ||||
TrEMBL | A0A2H5NH51 | 1e-121 | A0A2H5NH51_CITUN; Uncharacterized protein | ||||
TrEMBL | V4V7F6 | 1e-121 | V4V7F6_9ROSI; Uncharacterized protein | ||||
STRING | XP_006434799.1 | 1e-122 | (Citrus clementina) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Malvids | OGEM3744 | 27 | 59 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT5G42700.1 | 3e-73 | B3 family protein |
Publications ? help Back to Top | |||
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