PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Neem_22644_f_1

Organism

Azadirachta indica

Taxonomic ID

124943

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Sapindales; Meliaceae; Azadirachta

Family

CAMTA

Protein Properties

Length: 368aa MW: 41219.9 Da PI: 6.415

Description

CAMTA family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Neem_22644_f_1	genome	NGD	View Nucleic Acid

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	CG-1	189.7	2.8e-59	23	138	4	118
CG-1 4 e.kkrwlkneeiaaiLenfekheltlelktrpksgsliLynrkkvryfrkDGyswkkkkdgktvrEdhekLKvggvevlycyYahseenptfqrr 97 e ++rwl++ ei++iL n++k+++++e++++p+sgsl+L++rk++ryfrkDG++w+kkkdgktvrE+hekLKvg+v+vl+cyYah+een++fqrr Neem_22644_f_1 23 EaQHRWLRPAEICEILCNYQKFHIASEPPDKPPSGSLFLFDRKVLRYFRKDGHNWRKKKDGKTVREAHEKLKVGSVDVLHCYYAHGEENENFQRR 117 449****************************************************************************************** PP CG-1 98 cywlLeeelekivlvhylevk 118 cyw+Le++l +iv+vhylevk Neem_22644_f_1 118 CYWMLEQDLMHIVFVHYLEVK 138 ****************985 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
PROSITE profile	PS51437	84.854	17	143	IPR005559	CG-1 DNA-binding domain
SMART	SM01076	7.3E-83	20	138	IPR005559	CG-1 DNA-binding domain
Pfam	PF03859	8.1E-53	23	137	IPR005559	CG-1 DNA-binding domain

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0005634	Cellular Component	nucleus
GO:0003677	Molecular Function	DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 368 aa Download sequence Send to blast
MADRGGSYAA IGPRLDMQQL QMEAQHRWLR PAEICEILCN YQKFHIASEP PDKPPSGSLF 60 LFDRKVLRYF RKDGHNWRKK KDGKTVREAH EKLKVGSVDV LHCYYAHGEE NENFQRRCYW 120 MLEQDLMHIV FVHYLEVKGN KTNVGGIRGT NEVMSSPGNH SSLTFGFPGN HTKAASGITD 180 STSPTSTLTS SCEDADSGYD AEDSHHASSR SYSHFELPQT GNAPTFEKMD SGLSYSSVLN 240 RSSGLSPDSP EVRSSVPGDH VSHVGVGPRA NHDNYFTIES QKTLGLGSWE EVLEHCNKEY 300 DNVPSHANTK CILQKDNIVY DDLVANETAV KEDPGSSLLF QLDWQAGGLV QFLLLNQLYL 360 KIRKPLVD

Sequence ? help Back to Top

Protein Sequence Length: 368 aa Download sequence Send to blast

MADRGGSYAA IGPRLDMQQL QMEAQHRWLR PAEICEILCN YQKFHIASEP PDKPPSGSLF  60
LFDRKVLRYF RKDGHNWRKK KDGKTVREAH EKLKVGSVDV LHCYYAHGEE NENFQRRCYW  120
MLEQDLMHIV FVHYLEVKGN KTNVGGIRGT NEVMSSPGNH SSLTFGFPGN HTKAASGITD  180
STSPTSTLTS SCEDADSGYD AEDSHHASSR SYSHFELPQT GNAPTFEKMD SGLSYSSVLN  240
RSSGLSPDSP EVRSSVPGDH VSHVGVGPRA NHDNYFTIES QKTLGLGSWE EVLEHCNKEY  300
DNVPSHANTK CILQKDNIVY DDLVANETAV KEDPGSSLLF QLDWQAGGLV QFLLLNQLYL  360
KIRKPLVD

Functional Description ? help Back to Top
Source	Description
UniProt	Transcription activator that binds to the DNA consensus sequence 5'-[ACG]CGCG[GTC]-3' (By similarity). Regulates transcriptional activity in response to calcium signals (Probable). Binds calmodulin in a calcium-dependent manner (By similarity). Involved in freezing tolerance in association with CAMTA1 and CAMTA3. Contributes together with CAMTA1 and CAMTA3 to the positive regulation of the cold-induced expression of DREB1A/CBF3, DREB1B/CBF1 and DREB1C/CBF2 (PubMed:23581962). Involved together with CAMTA3 and CAMTA4 in the positive regulation of a general stress response (PubMed:25039701). Involved in tolerance to aluminum. Binds to the promoter of ALMT1 transporter and contributes to the positive regulation of aluminum-induced expression of ALMT1 (PubMed:25627216). {ECO:0000250\|UniProtKB:Q8GSA7, ECO:0000269\|PubMed:23581962, ECO:0000269\|PubMed:25039701, ECO:0000269\|PubMed:25627216, ECO:0000305\|PubMed:11925432}.

Regulation -- Description ? help Back to Top
Source	Description
UniProt	INDUCTION: By salt, wounding, abscisic acid, H(2)O(2) and salicylic acid (PubMed:12218065). Induced by aluminum (PubMed:25627216). {ECO:0000269\|PubMed:12218065, ECO:0000269\|PubMed:25627216}.

Annotation -- Nucleotide ? help Back to Top
Source	Hit ID	E-value	Description
GenBank	AP007304	2e-32	AP007304.2 Lotus japonicus genomic DNA, chromosome 4, clone: LjB10F10, BM1099, complete sequence.

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_006487645.1	1e-179	calmodulin-binding transcription activator 2 isoform X2
Refseq	XP_015388622.1	1e-179	calmodulin-binding transcription activator 2 isoform X1
Swissprot	Q6NPP4	9e-88	CMTA2_ARATH; Calmodulin-binding transcription activator 2
TrEMBL	A0A2H5QEH7	1e-177	A0A2H5QEH7_CITUN; Uncharacterized protein
STRING	XP_006487645.1	1e-178	(Citrus sinensis)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Malvids	OGEM25587	2	3

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT5G64220.2	2e-87	Calmodulin-binding transcription activator protein with CG-1 and Ankyrin domains

Publications ? help Back to Top
Benn G, et al. A key general stress response motif is regulated non-uniformly by CAMTA transcription factors. Plant J., 2014. 80(1): p. 82-92 [PMID:25039701] Kidokoro S, et al. Different Cold-Signaling Pathways Function in the Responses to Rapid and Gradual Decreases in Temperature. Plant Cell, 2017. 29(4): p. 760-774 [PMID:28351986]