PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Neem_225_f_3

Organism

Azadirachta indica

Taxonomic ID

124943

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Sapindales; Meliaceae; Azadirachta

Family

Dof

Protein Properties

Length: 322aa MW: 35125.2 Da PI: 8.6089

Description

Dof family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Neem_225_f_3	genome	NGD	View Nucleic Acid

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	zf-Dof	124.4	3.8e-39	49	108	3	62
zf-Dof 3 ekalkcprCdstntkfCyynnyslsqPryfCkaCrryWtkGGalrnvPvGggrrknkkss 62 +++l+cprCds+ntkfCyynny+l+qPr+fCk+CrryWtkGGalrnvP+Ggg+rknk+ss Neem_225_f_3 49 NQNLRCPRCDSSNTKFCYYNNYNLTQPRHFCKTCRRYWTKGGALRNVPIGGGCRKNKNSS 108 6889*****************************************************975 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
Pfam	PF02701	1.5E-32	50	106	IPR003851	Zinc finger, Dof-type
PROSITE profile	PS50884	29.544	52	106	IPR003851	Zinc finger, Dof-type
ProDom	PD007478	4.0E-24	52	102	IPR003851	Zinc finger, Dof-type
PROSITE pattern	PS01361	0	54	90	IPR003851	Zinc finger, Dof-type

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0006355	Biological Process	regulation of transcription, DNA-templated
GO:0003677	Molecular Function	DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 322 aa Download sequence Send to blast
MGECEAHEGQ SSLALSLQNS SQKSRGSGLC SWIYKEEKMI QELLGGGENQ NLRCPRCDSS 60 NTKFCYYNNY NLTQPRHFCK TCRRYWTKGG ALRNVPIGGG CRKNKNSSMS AIKSSSAAKM 120 KTVAYEFGRS SGHGNGFDHE FSSTPTMWTS PQNSPLLALL RTTQNPNINP LYLSNSVRVK 180 EEAAVLGTHV IKAEPVVATG ALNSGTVVLD PLNQVPSLGL CSPLWKNNQL HAQQYYQQNG 240 FLVGHEVQNS GMQELYQRLK SSTNYYADHS TSTVVLSNAG SSASTSTSTI LESAPFAGGE 300 LGFWNPAFSW SDHLPTTNGA YP

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_011039231.1	1e-131	PREDICTED: dof zinc finger protein DOF1.1-like isoform X2
TrEMBL	A0A2C9URH6	1e-127	A0A2C9URH6_MANES; Uncharacterized protein
TrEMBL	A0A3N7FCG5	1e-128	A0A3N7FCG5_POPTR; Uncharacterized protein
STRING	cassava4.1_024126m	1e-129	(Manihot esculenta)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Malvids	OGEM16000	9	15

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT1G07640.1	3e-31	Dof family protein