PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Neem_22402_f_2

Organism

Azadirachta indica

Taxonomic ID

124943

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Sapindales; Meliaceae; Azadirachta

Family

bZIP

Protein Properties

Length: 223aa MW: 25512.6 Da PI: 6.5107

Description

bZIP family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Neem_22402_f_2	genome	NGD	View Nucleic Acid

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	bZIP_1	48.7	1.6e-15	107	165	5	63
CHHHCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH CS bZIP_1 5 krerrkqkNReAArrsRqRKkaeieeLeekvkeLeaeNkaLkkeleelkkevaklksev 63 +++rr+++NRe+ArrsR RK++ ++eL v L +eN++L+++l++ ++ +++ +e+ Neem_22402_f_2 107 RKQRRMISNRESARRSRMRKQKHLDELWSQVIRLRTENHTLIDKLNHVSECHDRVLQEN 165 79*********************************************999877777766 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
SMART	SM00338	3.9E-16	103	167	IPR004827	Basic-leucine zipper domain
PROSITE profile	PS50217	10.576	105	156	IPR004827	Basic-leucine zipper domain
Pfam	PF00170	7.1E-13	107	164	IPR004827	Basic-leucine zipper domain
SuperFamily	SSF57959	4.9E-13	107	156	No hit	No description
Gene3D	G3DSA:1.20.5.170	3.8E-13	107	180	No hit	No description
CDD	cd14702	1.66E-21	108	159	No hit	No description
PROSITE pattern	PS00036	0	110	125	IPR004827	Basic-leucine zipper domain

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0006355	Biological Process	regulation of transcription, DNA-templated
GO:0003700	Molecular Function	transcription factor activity, sequence-specific DNA binding
GO:0043565	Molecular Function	sequence-specific DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 223 aa Download sequence Send to blast
MVPGDITGIQ YYLPPENPVP YPANNFGMMH ANSLPPENPV PYPANNFGMM HANIPNFHLN 60 RLLSNLPNSL IPPPGHEFMT TQSSSLSNNS STSDEAEEQQ LRIIDERKQR RMISNRESAR 120 RSRMRKQKHL DELWSQVIRL RTENHTLIDK LNHVSECHDR VLQENARLKE EASDLRQMLT 180 ELQISSPYTN ASLRDLDELP CNTAHLRAES TSQSITNSVD LLH

Nucleic Localization Signal ? help Back to Top

No.	Start	End	Sequence
1	119	126	RRSRMRKQ

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_006437815.1	1e-109	basic leucine zipper 43
Refseq	XP_006484292.1	1e-109	basic leucine zipper 43
TrEMBL	A0A2H5Q9N8	1e-108	A0A2H5Q9N8_CITUN; Uncharacterized protein
TrEMBL	V4THE4	1e-108	V4THE4_9ROSI; Uncharacterized protein
STRING	XP_006484292.1	1e-108	(Citrus sinensis)
STRING	XP_006437815.1	1e-108	(Citrus clementina)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Malvids	OGEM2892	24	69

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT1G13600.1	2e-44	basic leucine-zipper 58