PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Neem_22284_f_3 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Sapindales; Meliaceae; Azadirachta
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Family | HD-ZIP | ||||||||
Protein Properties | Length: 262aa MW: 29220.1 Da PI: 7.9923 | ||||||||
Description | HD-ZIP family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | Homeobox | 62.7 | 5.6e-20 | 117 | 171 | 2 | 56 |
T--SS--HHHHHHHHHHHHHSSS--HHHHHHHHHHCTS-HHHHHHHHHHHHHHHH CS Homeobox 2 rkRttftkeqleeLeelFeknrypsaeereeLAkklgLterqVkvWFqNrRakek 56 rk+ ++tkeq +Lee F++++++s ++++ LA+kl+L rqV vWFqNrRa+ k Neem_22284_f_3 117 RKKLRLTKEQFATLEESFKEHSTLSPKQKQALAEKLHLRPRQVEVWFQNRRARTK 171 78889************************************************98 PP | |||||||
2 | HD-ZIP_I/II | 122.6 | 2e-39 | 117 | 205 | 1 | 90 |
HD-ZIP_I/II 1 ekkrrlskeqvklLEesFeeeekLeperKvelareLglqprqvavWFqnrRARtktkqlEkdyeaLkraydalkeenerLekeveeLree 90 +kk+rl+keq ++LEesF+e+++L+p++K++la++L+l+prqv+vWFqnrRARtk+kq+E+d+e Lkr++++l+een+rL+ke +eL+ + Neem_22284_f_3 117 RKKLRLTKEQFATLEESFKEHSTLSPKQKQALAEKLHLRPRQVEVWFQNRRARTKLKQTEVDCELLKRCCETLTEENKRLQKELQELK-S 205 69*************************************************************************************9.4 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
Gene3D | G3DSA:1.10.10.60 | 3.5E-18 | 109 | 167 | IPR009057 | Homeodomain-like |
PROSITE profile | PS50071 | 17.572 | 113 | 173 | IPR001356 | Homeobox domain |
SuperFamily | SSF46689 | 1.88E-18 | 114 | 181 | IPR009057 | Homeodomain-like |
SMART | SM00389 | 1.3E-16 | 115 | 177 | IPR001356 | Homeobox domain |
CDD | cd00086 | 9.65E-17 | 116 | 174 | No hit | No description |
Pfam | PF00046 | 2.1E-17 | 117 | 171 | IPR001356 | Homeobox domain |
PROSITE pattern | PS00027 | 0 | 148 | 171 | IPR017970 | Homeobox, conserved site |
Pfam | PF02183 | 1.3E-9 | 173 | 206 | IPR003106 | Leucine zipper, homeobox-associated |
SMART | SM00340 | 1.4E-22 | 173 | 216 | IPR003106 | Leucine zipper, homeobox-associated |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0003700 | Molecular Function | transcription factor activity, sequence-specific DNA binding | ||||
GO:0043565 | Molecular Function | sequence-specific DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 262 aa Download sequence Send to blast |
MEFDDVCNTG LDLGITTLPK TGHQLKKKKL SLKYDHLLPS LTLGPSEDML KSATKNDVAG 60 KVCESTDVHQ QASSMSAVSS FSNTSVKKER DVGDEEVELE RVSNSRISDE DEDGSPRKKL 120 RLTKEQFATL EESFKEHSTL SPKQKQALAE KLHLRPRQVE VWFQNRRART KLKQTEVDCE 180 LLKRCCETLT EENKRLQKEL QELKSLKLSA PLYMKLPAAT LTLCPSCERL GSGGDGSTTN 240 SSFTFGPKSL YNSFTNPSAA SC |
Nucleic Localization Signal ? help Back to Top | |||
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No. | Start | End | Sequence |
1 | 165 | 173 | RRARTKLKQ |
Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Probable transcription factor. {ECO:0000250}. |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | JX601334 | 1e-148 | JX601334.1 Gossypium hirsutum clone NBRI_GE39498 microsatellite sequence. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_022772255.1 | 1e-122 | homeobox-leucine zipper protein HAT22-like | ||||
Swissprot | P46604 | 2e-80 | HAT22_ARATH; Homeobox-leucine zipper protein HAT22 | ||||
TrEMBL | A0A061FE72 | 1e-114 | A0A061FE72_THECC; HD domain class transcription factor | ||||
STRING | EOY15625 | 1e-114 | (Theobroma cacao) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Malvids | OGEM1671 | 28 | 86 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT4G37790.1 | 2e-69 | HD-ZIP family protein |
Publications ? help Back to Top | |||
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