PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Neem_22284_f_1
Organism
Azadirachta indica
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Sapindales; Meliaceae; Azadirachta
Family TALE
Protein Properties Length: 209aa    MW: 24589.3 Da    PI: 7.5327
Description TALE family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Neem_22284_f_1genomeNGDView Nucleic Acid
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Homeobox29.41.4e-091361712055
                     HHSSS--HHHHHHHHHHCTS-HHHHHHHHHHHHHHH CS
        Homeobox  20 eknrypsaeereeLAkklgLterqVkvWFqNrRake 55 
                     +k +yps++e+  LA+++gL+++q+ +WF N+R ++
  Neem_22284_f_1 136 YKWPYPSETEKLALAESTGLDQKQINNWFINQRKRH 171
                     5679*****************************885 PP
2ELK38.91.8e-1391112122
             ELK   1 ELKhqLlrKYsgyLgsLkqEFs 22 
                     ELK++LlrKYsgyL+sLkqE+s
  Neem_22284_f_1  91 ELKNHLLRKYSGYLSSLKQELS 112
                     9*******************97 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PfamPF037891.2E-1091112IPR005539ELK domain
PROSITE profilePS5121311.29691111IPR005539ELK domain
SMARTSM011883.5E-791112IPR005539ELK domain
PROSITE profilePS5007113.005111174IPR001356Homeobox domain
SuperFamilySSF466892.95E-20112186IPR009057Homeodomain-like
SMARTSM003891.5E-12113178IPR001356Homeobox domain
Gene3DG3DSA:1.10.10.607.9E-28116177IPR009057Homeodomain-like
CDDcd000861.48E-12123175No hitNo description
PfamPF059201.1E-16131170IPR008422Homeobox KN domain
PROSITE patternPS000270149172IPR017970Homeobox, conserved site
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0001708Biological Processcell fate specification
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0010051Biological Processxylem and phloem pattern formation
GO:0010089Biological Processxylem development
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 209 aa     Download sequence    Send to blast
MWEMPYKRII RFAILCALGC WVVMTHSKMN YLICITNLCY GQVLMLQFMH FFFDNLTDEK  60
CEGVGSSEED QDNSGGEAEL PEIDPRAEDR ELKNHLLRKY SGYLSSLKQE LSKKKKKGKL  120
PKEARQKLLS WWELHYKWPY PSETEKLALA ESTGLDQKQI NNWFINQRKR HWKPSEDMQF  180
MVMDGLHPQN AALYMDGHYM GDGPYRLGP
Functional Description ? help Back to Top
Source Description
UniProtProbably binds to the DNA sequence 5'-TGAC-3'.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_007018399.11e-108PREDICTED: homeobox protein knotted-1-like 2
RefseqXP_021283809.11e-108homeobox protein knotted-1-like 2
RefseqXP_021283810.11e-108homeobox protein knotted-1-like 2
RefseqXP_022768584.11e-108homeobox protein knotted-1-like 2 isoform X1
SwissprotO041351e-93KNAP2_MALDO; Homeobox protein knotted-1-like 2
TrEMBLA0A061FMA11e-107A0A061FMA1_THECC; KNOTTED-like from
STRINGEOY156241e-107(Theobroma cacao)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM65662335
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G08150.16e-82KNOTTED-like from Arabidopsis thaliana