PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Neem_22186_f_1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Sapindales; Meliaceae; Azadirachta
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Family | FAR1 | ||||||||
Protein Properties | Length: 234aa MW: 25685.9 Da PI: 6.6633 | ||||||||
Description | FAR1 family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | FAR1 | 49.4 | 1.6e-15 | 75 | 124 | 41 | 90 |
FAR1 41 reeekkktekerrtraetrtgCkaklkvkkekdgkwevtkleleHnHela 90 r++++++++k+rr+r+ tr gCka ++v+++++gkw+v+kle++HnHel+ Neem_22186_f_1 75 RSTDSEDDTKRRRSRPITREGCKALMTVRRKDSGKWYVAKLEKKHNHELV 124 34444457899*************************************97 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
Pfam | PF03101 | 2.5E-13 | 70 | 124 | IPR004330 | FAR1 DNA binding domain |
Sequence ? help Back to Top |
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Protein Sequence Length: 234 aa Download sequence Send to blast |
MEEEGSNAAK ELVDSYVSLE DEGNECCVVE DVQAPMVVDD NSKKVEDHVN FDLSRCLAGG 60 ILEPALGMER EKRARSTDSE DDTKRRRSRP ITREGCKALM TVRRKDSGKW YVAKLEKKHN 120 HELVTPAMRQ FLRSHKQECD LSNSSSISFG SSGLGLTASL NVLSEDCNSF GKMGLAVQNT 180 VNYIGRGRLS TFGIDAKGLL GFFKSSTKGF PSVQASILQV AYHEKNAEGN GPCV |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_010259163.1 | 2e-83 | PREDICTED: protein FAR1-RELATED SEQUENCE 5-like isoform X1 | ||||
Refseq | XP_010259169.1 | 2e-83 | PREDICTED: protein FAR1-RELATED SEQUENCE 5-like isoform X1 | ||||
Refseq | XP_010259175.1 | 2e-83 | PREDICTED: protein FAR1-RELATED SEQUENCE 5-like isoform X2 | ||||
Refseq | XP_010259184.1 | 1e-83 | PREDICTED: protein FAR1-RELATED SEQUENCE 5-like isoform X3 | ||||
Refseq | XP_010259189.1 | 1e-83 | PREDICTED: protein FAR1-RELATED SEQUENCE 5-like isoform X4 | ||||
TrEMBL | A0A1U7ZZ66 | 5e-82 | A0A1U7ZZ66_NELNU; protein FAR1-RELATED SEQUENCE 5-like isoform X1 | ||||
TrEMBL | A0A1U7ZZ72 | 4e-82 | A0A1U7ZZ72_NELNU; protein FAR1-RELATED SEQUENCE 5-like isoform X2 | ||||
TrEMBL | A0A1U7ZZ81 | 2e-82 | A0A1U7ZZ81_NELNU; protein FAR1-RELATED SEQUENCE 5-like isoform X4 | ||||
TrEMBL | A0A1U8AAU0 | 3e-82 | A0A1U8AAU0_NELNU; protein FAR1-RELATED SEQUENCE 5-like isoform X3 | ||||
STRING | XP_010259163.1 | 8e-83 | (Nelumbo nucifera) |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT4G38180.1 | 8e-14 | FAR1-related sequence 5 |