PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Neem_2214_f_1
Organism
Azadirachta indica
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Sapindales; Meliaceae; Azadirachta
Family HD-ZIP
Protein Properties Length: 834aa    MW: 91984.6 Da    PI: 6.5047
Description HD-ZIP family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Neem_2214_f_1genomeNGDView Nucleic Acid
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Homeobox58.41.2e-181775357
                   --SS--HHHHHHHHHHHHHSSS--HHHHHHHHHHC....TS-HHHHHHHHHHHHHHHHC CS
       Homeobox  3 kRttftkeqleeLeelFeknrypsaeereeLAkkl....gLterqVkvWFqNrRakekk 57
                   k  ++t+eq+e+Le+l++++++ps  +r++L +++    +++ +q+kvWFqNrR +ek+
  Neem_2214_f_1 17 KYVRYTPEQVEALERLYHECPKPSSIRRQQLIRECpilsNIEPKQIKVWFQNRRCREKQ 75
                   5679*****************************************************97 PP
2START177.76.8e-561443522205
                    HHHHHHHHHHHHHHHC-TT-EEEEEXCCTTEEEEEEESSS.SCEEEEEEEECCSCHHHHHHHHHCCCGGCT-TT-SEEEEEEEECTT..EEEEEEE CS
          START   2 laeeaaqelvkkalaeepgWvkssesengdevlqkfeeskvdsgealrasgvvdmvlallveellddkeqWdetlakaetlevissg..galqlmv 95 
                    +aee+++e+++ka+ ++  Wv+++ +++g++++ +++ s+++ g a+ra+g+v  +++  v+e+l+d++ W ++++++++l+v+ ++  g+++l +
  Neem_2214_f_1 144 IAEETLAEFLSKATGTAVEWVQMPGMKPGPDSVGIVAISHSCAGVAARACGLVGLEPT-RVAEILKDRPSWFRDCRAVDVLNVLPTAngGTIELLY 238
                    7899******************************************************.8888888888****************9999******* PP

                    EXXTTXX-SSX.EEEEEEEEEEE.TTS-EEEEEEEEE-TTS--....-TTSEE-EESSEEEEEEEECTCEEEEEEEE-EE--SSXXHHHHHHHHHH CS
          START  96 aelqalsplvp.RdfvfvRyirqlgagdwvivdvSvdseqkppe...sssvvRaellpSgiliepksnghskvtwvehvdlkgrlphwllrslvks 187
                    ++l+al++l+p Rdf+ +Ry+  l++g++v++++S+ ++q+ p+    +++vRae lpSg+li+p+++g+s +++v+h+dl+ ++++++lr+l++s
  Neem_2214_f_1 239 MQLYALTTLAPaRDFWLLRYTSVLEDGSLVVCERSLKNTQNGPSmppVQHFVRAEILPSGYLIRPCEGGGSIIHIVDHMDLEPWSVPEVLRPLYES 334
                    ******************************************9988899*********************************************** PP

                    HHHHHHHHHHHHTXXXXX CS
          START 188 glaegaktwvatlqrqce 205
                    +++ ++kt++a+l+++++
  Neem_2214_f_1 335 STVLAQKTTMAALRQLRQ 352
                    **************9876 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5007115.5481276IPR001356Homeobox domain
SMARTSM003891.2E-151480IPR001356Homeobox domain
SuperFamilySSF466894.28E-171680IPR009057Homeodomain-like
CDDcd000869.24E-171777No hitNo description
PfamPF000462.9E-161875IPR001356Homeobox domain
Gene3DG3DSA:1.10.10.601.6E-181975IPR009057Homeodomain-like
CDDcd146863.31E-669106No hitNo description
PROSITE profilePS5084825.78134362IPR002913START domain
CDDcd088753.77E-76138354No hitNo description
SuperFamilySSF559614.81E-37143355No hitNo description
Gene3DG3DSA:3.30.530.203.5E-23143350IPR023393START-like domain
SMARTSM002349.8E-41143353IPR002913START domain
PfamPF018524.9E-53144352IPR002913START domain
SuperFamilySSF559611.1E-5389478No hitNo description
SuperFamilySSF559611.1E-5510588No hitNo description
PfamPF086701.9E-51691833IPR013978MEKHLA
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0009965Biological Processleaf morphogenesis
GO:0010014Biological Processmeristem initiation
GO:0010075Biological Processregulation of meristem growth
GO:0010087Biological Processphloem or xylem histogenesis
GO:0048263Biological Processdetermination of dorsal identity
GO:0080060Biological Processintegument development
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
GO:0008289Molecular Functionlipid binding
Sequence ? help Back to Top
Protein Sequence    Length: 834 aa     Download sequence    Send to blast
MAMSCKDGKP GSFDNGKYVR YTPEQVEALE RLYHECPKPS SIRRQQLIRE CPILSNIEPK  60
QIKVWFQNRR CREKQRKEAS RLQAVNRKLT AMNKLLMEEN DRLQKQTTLA TKDTSCESVV  120
TSGQHHLTPQ HPPRDASPAG LLSIAEETLA EFLSKATGTA VEWVQMPGMK PGPDSVGIVA  180
ISHSCAGVAA RACGLVGLEP TRVAEILKDR PSWFRDCRAV DVLNVLPTAN GGTIELLYMQ  240
LYALTTLAPA RDFWLLRYTS VLEDGSLVVC ERSLKNTQNG PSMPPVQHFV RAEILPSGYL  300
IRPCEGGGSI IHIVDHMDLE PWSVPEVLRP LYESSTVLAQ KTTMAALRQL RQIAQEVSQS  360
SVTGWGRRPA ALRALSQRLS RQMLHYRGFN EAVNGFTDEG WTVMGNDGMD DVTILVNSSP  420
EKLMGLNLSF GNGFPTVSNA VLCAKASMLL QNVPPAILLR FLREHRSEWA DNNIDVYSAA  480
AIKVGPCTLP GSRVGSFGSQ VILPLAHTIE HEEFMEVIKL EGVGHSPEDT MMPRDMFLLQ  540
LCSGMDENAV GTCAELIFAP IDASFADDAP VLPSGFRIIP LDSGKMLLNT IQEASSPNRT  600
LDLASALEIG PAGNRASNDY SSNSSCMRSV MTIAFEFAFE SHMQEHVATM ARQYVRSIIS  660
SVQRVALALS PSHLSSQAGL RTPLGTPEAQ TLARWICQSY RCYLGVELLK SSSEGSESIL  720
KTLWHHTDAV MCCSLKALPV FTFANQAGLD LLETTLVALQ DITLEKMFDD HGRKALFSEF  780
PQIMQQGFAC LQGGICLSSM GRPVSYERAV AWKVLNEEEA AHCICFMFIN WSFV
Functional Description ? help Back to Top
Source Description
UniProtProbable transcription factor involved in the regulation of meristem development to promote lateral organ formation. May regulates procambial and vascular tissue formation or maintenance, and vascular development in inflorescence stems. {ECO:0000269|PubMed:15598805, ECO:0000269|PubMed:15705957, ECO:0000269|PubMed:16617092}.
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00200DAPTransfer from AT1G52150Download
Motif logo
Regulation -- Description ? help Back to Top
Source Description
UniProtINDUCTION: By auxin. Repressed by miR165 and miR166. {ECO:0000269|PubMed:15773855, ECO:0000269|PubMed:16033795, ECO:0000269|PubMed:16617092, ECO:0000269|PubMed:17237362}.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_006426893.10.0homeobox-leucine zipper protein ATHB-15
RefseqXP_006465680.10.0homeobox-leucine zipper protein ATHB-15
RefseqXP_015386901.10.0homeobox-leucine zipper protein ATHB-15
SwissprotQ9ZU110.0ATB15_ARATH; Homeobox-leucine zipper protein ATHB-15
TrEMBLV4RYP00.0V4RYP0_9ROSI; Uncharacterized protein
STRINGXP_006465679.10.0(Citrus sinensis)
STRINGXP_006426892.10.0(Citrus clementina)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM20222678
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G52150.20.0HD-ZIP family protein
Publications ? help Back to Top
  1. Yamada T,Sasaki Y,Hashimoto K,Nakajima K,Gasser CS
    CORONA, PHABULOSA and PHAVOLUTA collaborate with BELL1 to confine WUSCHEL expression to the nucellus in Arabidopsis ovules.
    Development, 2016. 143(3): p. 422-6
    [PMID:26700684]