PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Neem_22125_f_2
Organism
Azadirachta indica
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Sapindales; Meliaceae; Azadirachta
Family HSF
Protein Properties Length: 440aa    MW: 50970 Da    PI: 6.3946
Description HSF family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Neem_22125_f_2genomeNGDView Nucleic Acid
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HSF_DNA-bind115.24.2e-36421342103
                     HHHHHHHHHCTGGGTTTSEESSSSSEEEES-HHHHHHHTHHHHSTT--HHHHHHHHHHTTEEE---SSBTTTTXTTSEEEEESXXXXXXXXXXXX CS
    HSF_DNA-bind   2 FlkklyeiledeelkeliswsengnsfvvldeeefakkvLpkyFkhsnfaSFvRQLnmYgFkkvkdeekkskskekiweFkhksFkkgkkellek 96 
                     Fl+k+y+i+ed +++++isws+ +nsfvv+d+++f+ ++LpkyFkh+nf+SFvRQLn+YgF+kv+ ++         weF+++ F +g+++ll++
  Neem_22125_f_2  42 FLTKTYDIVEDCSTNHIISWSRGNNSFVVWDPQSFSIRLLPKYFKHNNFSSFVRQLNTYGFRKVDPDR---------WEFANEGFLRGQRHLLKN 127
                     9****************************************************************999.........****************** PP

                     XXXXXXX CS
    HSF_DNA-bind  97 ikrkkse 103
                     i+r+k++
  Neem_22125_f_2 128 IRRRKTT 134
                     ****986 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF467854.22E-3537131IPR011991Winged helix-turn-helix DNA-binding domain
Gene3DG3DSA:1.10.10.106.4E-3938131IPR011991Winged helix-turn-helix DNA-binding domain
SMARTSM004156.3E-6138131IPR000232Heat shock factor (HSF)-type, DNA-binding
PfamPF004472.2E-3142131IPR000232Heat shock factor (HSF)-type, DNA-binding
PRINTSPR000566.0E-194265IPR000232Heat shock factor (HSF)-type, DNA-binding
PRINTSPR000566.0E-198092IPR000232Heat shock factor (HSF)-type, DNA-binding
PROSITE patternPS00434081105IPR000232Heat shock factor (HSF)-type, DNA-binding
PRINTSPR000566.0E-1993105IPR000232Heat shock factor (HSF)-type, DNA-binding
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 440 aa     Download sequence    Send to blast
MNPQGRVKEE FPEASSSSYS GGMASTAPQP MEGLHDSGPP PFLTKTYDIV EDCSTNHIIS  60
WSRGNNSFVV WDPQSFSIRL LPKYFKHNNF SSFVRQLNTY GFRKVDPDRW EFANEGFLRG  120
QRHLLKNIRR RKTTQSPVSQ QALEACVEVG SFGLDGELDR LRRDKQVLMV ELVKLRQQQQ  180
NTREYLQLME QRLKRTELKQ QQMMNFMARA MQNPNFVQQL VQQKDRRKKF EEMITRKRRR  240
HIDQGPSNIK VGELGQGGDE LSFVKIEPEE YGNVADFEVS ELDKLAMEMQ GLSESQKNHD  300
EEYLEKGEEH GNKEKYTADE GFWEDFLTGD IEEQIIAGDQ EEENTRKGSE LQPSNVQNDW  360
QREHSGSCSA GTDEKRKVDD QSETLMVVAA SRIELDHIKR LPFLSARSRD RIAHAVREPF  420
SKSHPSKPAT KVWVPYEIHQ
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
2ldu_A2e-253713612125Heat shock factor protein 1
Search in ModeBase
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1225239RRKKFEEMITRKRRR
2235239RKRRR
Functional Description ? help Back to Top
Source Description
UniProtTranscriptional activator that specifically binds DNA sequence 5'-AGAAnnTTCT-3' known as heat shock promoter elements (HSE).
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00371DAPTransfer from AT3G22830Download
Motif logo
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_006420034.10.0heat stress transcription factor A-6b
SwissprotQ9LUH81e-133HFA6B_ARATH; Heat stress transcription factor A-6b
TrEMBLA0A067GG690.0A0A067GG69_CITSI; Uncharacterized protein
STRINGXP_006420034.10.0(Citrus clementina)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM12562899
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G22830.11e-135heat shock transcription factor A6B