PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Neem_21983_f_1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Sapindales; Meliaceae; Azadirachta
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Family | MYB_related | ||||||||
Protein Properties | Length: 308aa MW: 34428.4 Da PI: 4.9396 | ||||||||
Description | MYB_related family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | Myb_DNA-binding | 48.6 | 1.9e-15 | 14 | 62 | 1 | 46 |
TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHT...TTS-HHHHHHHHHH CS Myb_DNA-binding 1 rgrWTteEdellvdavkqlGggtWktIartmg...kgRtlkqcksrwqk 46 rg W++eEd +++ +v ++G g+W++++r+ gRt++++k++w++ Neem_21983_f_1 14 RGIWSAEEDAKILAYVSKHGAGNWTAVPRKAAqqlPGRTDNDVKNYWNT 62 788***************************999999***********97 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
Gene3D | G3DSA:1.10.10.60 | 2.3E-21 | 5 | 71 | IPR009057 | Homeodomain-like |
SuperFamily | SSF46689 | 9.33E-16 | 8 | 73 | IPR009057 | Homeodomain-like |
PROSITE profile | PS51294 | 21.087 | 9 | 68 | IPR017930 | Myb domain |
SMART | SM00717 | 2.0E-13 | 13 | 66 | IPR001005 | SANT/Myb domain |
Pfam | PF00249 | 5.8E-13 | 14 | 62 | IPR001005 | SANT/Myb domain |
CDD | cd00167 | 2.11E-13 | 17 | 64 | No hit | No description |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0003677 | Molecular Function | DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 308 aa Download sequence Send to blast |
MGRPPCCDKL NVKRGIWSAE EDAKILAYVS KHGAGNWTAV PRKAAQQLPG RTDNDVKNYW 60 NTKLRKKLSE MGIDPVTHKP FSQILADYGN IGGLPKSGNR IGSLNRDMKN AFMPKPEQHH 120 LPPFQVFSNI NSHLMTTMVL PKVETIQDNS NSTVDLLAQL QAIKLVTEAS NCANSNHEAM 180 SPRFYDEGSF SSSSSSSSSS TCSTAGQEKL PPNFSWQDFL LEDAFLSADP PEQEQDNNMV 240 EFSSKEFTQR TENYVITQNQ NNKEIPAQRM DIGASSSTNS TSFVEAMLDQ ENEMFLEFPN 300 LLEEPFYN |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_006477532.2 | 1e-125 | transcription factor MYB35-like, partial | ||||
TrEMBL | V4VJQ0 | 1e-122 | V4VJQ0_9ROSI; Uncharacterized protein | ||||
STRING | XP_006477532.1 | 1e-124 | (Citrus sinensis) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Malvids | OGEM4 | 28 | 2646 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT3G28470.1 | 1e-35 | MYB family protein |