PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Neem_21983_f_1
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Sapindales; Meliaceae; Azadirachta
Family MYB_related
Protein Properties Length: 308aa    MW: 34428.4 Da    PI: 4.9396
Description MYB_related family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Neem_21983_f_1genomeNGDView Nucleic Acid
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Myb_DNA-binding48.61.9e-151462146
                     TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHT...TTS-HHHHHHHHHH CS
  Myb_DNA-binding  1 rgrWTteEdellvdavkqlGggtWktIartmg...kgRtlkqcksrwqk 46
                     rg W++eEd +++ +v ++G g+W++++r+      gRt++++k++w++
   Neem_21983_f_1 14 RGIWSAEEDAKILAYVSKHGAGNWTAVPRKAAqqlPGRTDNDVKNYWNT 62
                     788***************************999999***********97 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:1.10.10.602.3E-21571IPR009057Homeodomain-like
SuperFamilySSF466899.33E-16873IPR009057Homeodomain-like
PROSITE profilePS5129421.087968IPR017930Myb domain
SMARTSM007172.0E-131366IPR001005SANT/Myb domain
PfamPF002495.8E-131462IPR001005SANT/Myb domain
CDDcd001672.11E-131764No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 308 aa     Download sequence    Send to blast
MGRPPCCDKL NVKRGIWSAE EDAKILAYVS KHGAGNWTAV PRKAAQQLPG RTDNDVKNYW  60
NTKLRKKLSE MGIDPVTHKP FSQILADYGN IGGLPKSGNR IGSLNRDMKN AFMPKPEQHH  120
LPPFQVFSNI NSHLMTTMVL PKVETIQDNS NSTVDLLAQL QAIKLVTEAS NCANSNHEAM  180
SPRFYDEGSF SSSSSSSSSS TCSTAGQEKL PPNFSWQDFL LEDAFLSADP PEQEQDNNMV  240
EFSSKEFTQR TENYVITQNQ NNKEIPAQRM DIGASSSTNS TSFVEAMLDQ ENEMFLEFPN  300
LLEEPFYN
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_006477532.21e-125transcription factor MYB35-like, partial
TrEMBLV4VJQ01e-122V4VJQ0_9ROSI; Uncharacterized protein
STRINGXP_006477532.11e-124(Citrus sinensis)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM4282646
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G28470.11e-35MYB family protein