PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Neem_2174_f_6 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Sapindales; Meliaceae; Azadirachta
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Family | NAC | ||||||||
Protein Properties | Length: 247aa MW: 27852.2 Da PI: 9.614 | ||||||||
Description | NAC family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | NAM | 142.7 | 2.1e-44 | 11 | 149 | 1 | 128 |
NAM 1 lppGfrFhPtdeelvveyLkkkvegkkleleevikevdiykvePwdLpk...........kvkaeekewy......fFskrdkkyatgkrknratk 79 lppGfrFhP+d+elv++yL kk++++ ++ ++evd++k+ePwd+p+ + ++++++ +rd+kyatg r+nrat+ Neem_2174_f_6 11 LPPGFRFHPKDDELVCDYLMKKATHSCETV--LLTEVDLNKCEPWDIPAslqlilwrkvcQ---NHSQVHkltmmpKCLQRDRKYATGLRTNRATA 101 79********************99887544..69**************6589999986541...23333211111256789*************** PP NAM 80 sgyWkatgkdkevlskkgelvglkktLvfykgrapkgektdWvmheyrl 128 sgyWkatgkd+++++ kg+lvg++ktLvfy+grapkg+ktdWvmhe+r+ Neem_2174_f_6 102 SGYWKATGKDRAIHR-KGSLVGMRKTLVFYQGRAPKGRKTDWVMHEFRI 149 **************9.999****************************97 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
SuperFamily | SSF101941 | 1.44E-43 | 2 | 153 | IPR003441 | NAC domain |
PROSITE profile | PS51005 | 41.652 | 11 | 175 | IPR003441 | NAC domain |
Pfam | PF02365 | 7.2E-23 | 12 | 149 | IPR003441 | NAC domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0003677 | Molecular Function | DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 247 aa Download sequence Send to blast |
MSNISMLEAK LPPGFRFHPK DDELVCDYLM KKATHSCETV LLTEVDLNKC EPWDIPASLQ 60 LILWRKVCQN HSQVHKLTMM PKCLQRDRKY ATGLRTNRAT ASGYWKATGK DRAIHRKGSL 120 VGMRKTLVFY QGRAPKGRKT DWVMHEFRIE SASFASPKGS SLKQPNMDIS TARSTFGKIP 180 VVGSACLDLD PFSCDTKVIK AVLNQLTKIE SNDNIVKESP PSFGEPSSEL SYLSEVGMPT 240 NIMWNHF |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
3ulx_A | 4e-37 | 8 | 149 | 12 | 140 | Stress-induced transcription factor NAC1 |
Search in ModeBase |
Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Transcriptional activator that mediates auxin signaling to promote lateral root development. Activates the expression of two downstream auxin-responsive genes, DBP and AIR3. {ECO:0000269|PubMed:11114891}. |
Regulation -- Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | INDUCTION: Induced by auxin. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_012072721.1 | 1e-87 | NAC domain-containing protein 21/22 | ||||
Swissprot | Q84TE6 | 8e-66 | NAC22_ARATH; NAC domain-containing protein 21/22 | ||||
TrEMBL | A0A2N9HI59 | 9e-91 | A0A2N9HI59_FAGSY; Uncharacterized protein | ||||
STRING | cassava4.1_029889m | 1e-79 | (Manihot esculenta) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Malvids | OGEM3619 | 28 | 59 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT1G56010.2 | 4e-68 | NAC domain containing protein 1 |