PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Neem_21514_f_1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Sapindales; Meliaceae; Azadirachta
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Family | TALE | ||||||||
Protein Properties | Length: 200aa MW: 23177.2 Da PI: 7.6001 | ||||||||
Description | TALE family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | Homeobox | 25.3 | 2.6e-08 | 146 | 179 | 21 | 54 |
HSSS--HHHHHHHHHHCTS-HHHHHHHHHHHHHH CS Homeobox 21 knrypsaeereeLAkklgLterqVkvWFqNrRak 54 k +yp++e++++L +++gL+ +q+ +WF N+R + Neem_21514_f_1 146 KWPYPTEEDKARLVQETGLQLKQINNWFINQRKR 179 469*****************************87 PP | |||||||
2 | ELK | 23.9 | 9.8e-09 | 100 | 121 | 1 | 22 |
ELK 1 ELKhqLlrKYsgyLgsLkqEFs 22 ELKh+L++ Y+++++++++E++ Neem_21514_f_1 100 ELKHELKQCYKEKIVDIREEIL 121 9*******************97 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
SMART | SM01256 | 4.6E-13 | 3 | 43 | IPR005541 | KNOX2 |
Pfam | PF03791 | 8.9E-13 | 4 | 42 | IPR005541 | KNOX2 |
SMART | SM01188 | 0.0066 | 100 | 121 | IPR005539 | ELK domain |
PROSITE profile | PS51213 | 9.394 | 100 | 120 | IPR005539 | ELK domain |
Pfam | PF03789 | 4.2E-5 | 100 | 121 | IPR005539 | ELK domain |
PROSITE profile | PS50071 | 11.726 | 120 | 183 | IPR001356 | Homeobox domain |
SuperFamily | SSF46689 | 1.33E-16 | 122 | 186 | IPR009057 | Homeodomain-like |
SMART | SM00389 | 4.7E-11 | 122 | 187 | IPR001356 | Homeobox domain |
CDD | cd00086 | 3.53E-11 | 123 | 184 | No hit | No description |
Gene3D | G3DSA:1.10.10.60 | 1.2E-25 | 127 | 184 | IPR009057 | Homeodomain-like |
Pfam | PF05920 | 3.9E-18 | 140 | 179 | IPR008422 | Homeobox KN domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0005634 | Cellular Component | nucleus | ||||
GO:0003677 | Molecular Function | DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 200 aa Download sequence Send to blast |
MQTHYVLLLC SFKEQLQQHV RVHAMEAVMA CWEIEQSLQS LTGVSPGEGT GATMSDDDED 60 QVDSDANLFD GSLDGPDSMG FGPLIPTESE RSLMERVRQE LKHELKQCYK EKIVDIREEI 120 LRKRRAGKLP GDTTSVLKAW WQSHSKWPYP TEEDKARLVQ ETGLQLKQIN NWFINQRKRN 180 WHSNPSTSTV LKSKRKRYFK |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
1x2n_A | 4e-13 | 123 | 187 | 8 | 72 | Homeobox protein PKNOX1 |
Search in ModeBase |
Nucleic Localization Signal ? help Back to Top | |||
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No. | Start | End | Sequence |
1 | 176 | 196 | RKRNWHSNPSTSTVLKSKRKR |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | FJ388876 | 3e-59 | FJ388876.1 Juglans nigra KNAT3-like transcription factor mRNA, complete cds. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_021276163.1 | 1e-141 | homeobox protein knotted-1-like 3 isoform X1 | ||||
Refseq | XP_021276166.1 | 1e-141 | homeobox protein knotted-1-like 3 isoform X3 | ||||
Swissprot | P48000 | 1e-130 | KNAT3_ARATH; Homeobox protein knotted-1-like 3 | ||||
TrEMBL | A0A2P5DDC5 | 1e-142 | A0A2P5DDC5_PARAD; Knotted-like homeobox transcription factor | ||||
STRING | VIT_04s0008g06130.t01 | 1e-137 | (Vitis vinifera) | ||||
STRING | XP_004290929.1 | 1e-137 | (Fragaria vesca) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Malvids | OGEM444 | 28 | 158 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT5G25220.2 | 1e-126 | KNOTTED1-like homeobox gene 3 |
Publications ? help Back to Top | |||
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