PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Neem_21410_f_1
Organism
Azadirachta indica
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Sapindales; Meliaceae; Azadirachta
Family MIKC_MADS
Protein Properties Length: 165aa    MW: 19447.5 Da    PI: 10.377
Description MIKC_MADS family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Neem_21410_f_1genomeNGDView Nucleic Acid
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1SRF-TF83.81e-26959151
                    S---SHHHHHHHHHHHHHHHHHHHHHHHHHHT-EEEEEEE-TTSEEEEEE- CS
          SRF-TF  1 krienksnrqvtfskRrngilKKAeELSvLCdaevaviifsstgklyeyss 51
                    krien + rqvtfskRr+g+lKK +ELSvLCda++ +iifsstgkl  y++
  Neem_21410_f_1  9 KRIENPTTRQVTFSKRRAGLLKKTHELSVLCDAQIGLIIFSSTGKLCQYCT 59
                    79***********************************************96 PP
2K-box62.51.7e-21831591288
           K-box  12 akaeslqqelakLkkeienLqreqRhllGedLesLslkeLqqLeqqLekslkkiRskKnellleqieelqkkekelq 88 
                        e+l +el  L+ke++ Lq + R++ Ge+L+s+ +++L +Leq+Le+s++k+R +Knell +q+++l++ke++l+
  Neem_21410_f_1  83 DSREQLLNELGVLRKETRHLQLSMRRYTGENLSSIPYEDLDELEQELERSVNKVRGRKNELLQQQLDNLRRKERMLD 159
                     45678999******************************************************************997 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SMARTSM004328.6E-39160IPR002100Transcription factor, MADS-box
PROSITE profilePS5006629.857161IPR002100Transcription factor, MADS-box
SuperFamilySSF554557.85E-29279IPR002100Transcription factor, MADS-box
CDDcd002651.94E-36276No hitNo description
PROSITE patternPS003500357IPR002100Transcription factor, MADS-box
PRINTSPR004042.0E-27323IPR002100Transcription factor, MADS-box
PfamPF003191.2E-231057IPR002100Transcription factor, MADS-box
PRINTSPR004042.0E-272338IPR002100Transcription factor, MADS-box
PRINTSPR004042.0E-273859IPR002100Transcription factor, MADS-box
PfamPF014868.1E-2081159IPR002487Transcription factor, K-box
PROSITE profilePS5129712.71285165IPR002487Transcription factor, K-box
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 165 aa     Download sequence    Send to blast
MGRGKIAIKR IENPTTRQVT FSKRRAGLLK KTHELSVLCD AQIGLIIFSS TGKLCQYCTE  60
PYRIEQIIKR RTKVTGIRIP EHDSREQLLN ELGVLRKETR HLQLSMRRYT GENLSSIPYE  120
DLDELEQELE RSVNKVRGRK NELLQQQLDN LRRKERMLDS LMWIN
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5f28_A1e-18159159MEF2C
5f28_B1e-18159159MEF2C
5f28_C1e-18159159MEF2C
5f28_D1e-18159159MEF2C
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtProbable transcription factor.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_006484520.13e-99protein TRANSPARENT TESTA 16
RefseqXP_024042551.13e-99protein TRANSPARENT TESTA 16
RefseqXP_024042552.13e-99protein TRANSPARENT TESTA 16
RefseqXP_024042553.13e-99protein TRANSPARENT TESTA 16
RefseqXP_024956637.13e-99protein TRANSPARENT TESTA 16
RefseqXP_024956638.13e-99protein TRANSPARENT TESTA 16
SwissprotQ9ATE53e-67FBP24_PETHY; MADS-box protein FBP24
TrEMBLV4TC414e-98V4TC41_9ROSI; Uncharacterized protein
STRINGXP_006437607.18e-99(Citrus clementina)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM65062543
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G23260.21e-57MIKC_MADS family protein
Publications ? help Back to Top
  1. Tonaco IA,Borst JW,de Vries SC,Angenent GC,Immink RG
    In vivo imaging of MADS-box transcription factor interactions.
    J. Exp. Bot., 2006. 57(1): p. 33-42
    [PMID:16291798]