PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Home  TFext  BLAST  Prediction  Download  Help  About  Links  PlantRegMap
(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Neem_21394_f_3
Organism
Azadirachta indica
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Sapindales; Meliaceae; Azadirachta
Family NAC
Protein Properties Length: 604aa    MW: 68428 Da    PI: 4.8732
Description NAC family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Neem_21394_f_3genomeNGDView Nucleic Acid
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1NAM170.17.1e-5391361128
             NAM   1 lppGfrFhPtdeelvveyLkkkvegkkleleevikevdiykvePwdLp..kkvkaeekewyfFskrdkkyatgkrknratksgyWkatgkdkevl 93 
                     lp GfrF+Ptdeel+++yL+ k++gk+ ++ +vi+e+d++k+ePwdLp  + +k++++ew+fF+++d+ky++g+r nrat++gyWkatgkd++++
  Neem_21394_f_3   9 LPLGFRFRPTDEELIDFYLRLKINGKNDDV-RVINEIDVCKWEPWDLPdlSVIKTKDQEWFFFCPQDRKYPNGHRLNRATEAGYWKATGKDRKIK 102
                     699************************999.99**************96448899999************************************* PP

             NAM  94 skkgelvglkktLvfykgrapkgektdWvmheyrl 128
                     s +++l+g+kktLvf+ grapkg++t+Wvmheyr+
  Neem_21394_f_3 103 S-GNNLIGMKKTLVFHIGRAPKGKRTNWVMHEYRA 136
                     *.999****************************96 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF1019418.63E-623159IPR003441NAC domain
PROSITE profilePS5100556.4889159IPR003441NAC domain
PfamPF023651.1E-2610135IPR003441NAC domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0009814Biological Processdefense response, incompatible interaction
GO:0010200Biological Processresponse to chitin
GO:0070417Biological Processcellular response to cold
GO:0005634Cellular Componentnucleus
GO:0005886Cellular Componentplasma membrane
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 604 aa     Download sequence    Send to blast
MAVLSMNSLP LGFRFRPTDE ELIDFYLRLK INGKNDDVRV INEIDVCKWE PWDLPDLSVI  60
KTKDQEWFFF CPQDRKYPNG HRLNRATEAG YWKATGKDRK IKSGNNLIGM KKTLVFHIGR  120
APKGKRTNWV MHEYRATTED LDGTKPGQSA FVLCRLFKKQ DESIEVSNCD EVEPSDSSPI  180
SAKSCPQSDF AIDQTSQDKK TSDTQALVEC QSKISNAYDA EDQTTDEVTT TEIYPTMGEE  240
DFDALNELMS EPLDCSFLHP LYSPVPGERG PFYHPDIGDL TGNQMEVHFQ FESDAYEREF  300
LDSVLKNSDE HLFDETDNQR NSFLESANPK KDSRSCSKSD VEVTQALPEP DFPSSFWYGK  360
NIVREAPLKI ERIPDNYRIA TSQISVNESS INFTNSRYLK KQNLFTDFGS SELDVFSTGS  420
SRGQFSNALN DYSESNNHTD AISSSSGIRI RTRQPRSHQH IQGFMAQGDA PKRLHLEVKL  480
QVGSVNTKSS FESLMLEEDE SKPIVAEDVI NAEKEYPEHV PHAAATSAIY ELQGNFHFES  540
SENNNISEEL IMDGRAKGRS NSTIFKTSQA GHSRWSFAAM FRAAAVAVMF AILISSWRCL  600
CLNY
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1ut4_A1e-46416312169NO APICAL MERISTEM PROTEIN
1ut4_B1e-46416312169NO APICAL MERISTEM PROTEIN
1ut7_A1e-46416312169NO APICAL MERISTEM PROTEIN
1ut7_B1e-46416312169NO APICAL MERISTEM PROTEIN
3swm_A2e-46416315172NAC domain-containing protein 19
3swm_B2e-46416315172NAC domain-containing protein 19
3swm_C2e-46416315172NAC domain-containing protein 19
3swm_D2e-46416315172NAC domain-containing protein 19
3swp_A2e-46416315172NAC domain-containing protein 19
3swp_B2e-46416315172NAC domain-containing protein 19
3swp_C2e-46416315172NAC domain-containing protein 19
3swp_D2e-46416315172NAC domain-containing protein 19
4dul_A1e-46416312169NAC domain-containing protein 19
4dul_B1e-46416312169NAC domain-containing protein 19
Search in ModeBase
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00398DAPTransfer from AT3G49530Download
Motif logo
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_006478082.10.0NAC domain-containing protein 62-like isoform X3
TrEMBLA0A067DNN30.0A0A067DNN3_CITSI; Uncharacterized protein
STRINGXP_006478080.10.0(Citrus sinensis)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM24162873
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G33060.11e-93NAC 014