PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Neem_21286_f_1

Organism

Azadirachta indica

Taxonomic ID

124943

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Sapindales; Meliaceae; Azadirachta

Family

CPP

Protein Properties

Length: 553aa MW: 60944.7 Da PI: 6.2983

Description

CPP family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Neem_21286_f_1	genome	NGD	View Nucleic Acid

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	TCR	49.2	1.1e-15	333	371	3	41
TCR 3 kkgCnCkkskClkkYCeCfaagkkCseeCkCedCkNkee 41 +k+CnCkk++Clk+YC+Cfaag +C+e C C++C+N+ e Neem_21286_f_1 333 CKRCNCKKTRCLKLYCDCFAAGIYCAEPCACQGCFNRPE 371 79**********************************876 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
SMART	SM01114	6.4E-16	331	372	IPR033467	Tesmin/TSO1-like CXC domain
PROSITE profile	PS51634	16.093	332	395	IPR005172	CRC domain
Pfam	PF03638	1.6E-11	334	369	IPR005172	CRC domain

Sequence ? help Back to Top
Protein Sequence Length: 553 aa Download sequence Send to blast
NTNTLQSSVS GRTDSQETLS KFDDKNDRVS KVDVAVDIFR EAEDNIHGKA TRDIKTNEQI 60 EFNSSLDYAS KKQQSENSSA QNAGSAPRGE SDCPLQLLSE PLQTLQTYND SLENAGVIAH 120 GPDDNAMHDL EASKQQRGMS RRCLQFAEAQ PKATVDGTNP SIKSNDATSA RSSPSLVESE 180 SLDSSYVDLN AASGKRQPTN LPQPTTPMFP PRYTGRSPLT VSKPSGIGLH LNSIVNALPK 240 GGGAIVGVKL ASAEHEILEN KASISVSSLI SESFDDTVSL NWLPQVDHNT TPHIKRKFNS 300 EQTDSFEEFC PLSPKRKRQT LKKSSSTVDG DGCKRCNCKK TRCLKLYCDC FAAGIYCAEP 360 CACQGCFNRP EYEDTVLETR QQIESRNPLA FAPKIVQRVA EFVVNIGLLY PLSSVSFIIF 420 FSDFLLFNLA ILAVFACYRM MATILPHPQV GTKEAATAKS HSVLKSIVNA IRLMLDVQVD 480 VDVRVVKICM ARRKQQTNEE YVGNEEIMSN RAISEGTSDA KLEMVINKRD FLHAELYDPH 540 NLTPLTPSFQ CLE

Sequence ? help Back to Top

Protein Sequence Length: 553 aa Download sequence Send to blast

NTNTLQSSVS GRTDSQETLS KFDDKNDRVS KVDVAVDIFR EAEDNIHGKA TRDIKTNEQI  60
EFNSSLDYAS KKQQSENSSA QNAGSAPRGE SDCPLQLLSE PLQTLQTYND SLENAGVIAH  120
GPDDNAMHDL EASKQQRGMS RRCLQFAEAQ PKATVDGTNP SIKSNDATSA RSSPSLVESE  180
SLDSSYVDLN AASGKRQPTN LPQPTTPMFP PRYTGRSPLT VSKPSGIGLH LNSIVNALPK  240
GGGAIVGVKL ASAEHEILEN KASISVSSLI SESFDDTVSL NWLPQVDHNT TPHIKRKFNS  300
EQTDSFEEFC PLSPKRKRQT LKKSSSTVDG DGCKRCNCKK TRCLKLYCDC FAAGIYCAEP  360
CACQGCFNRP EYEDTVLETR QQIESRNPLA FAPKIVQRVA EFVVNIGLLY PLSSVSFIIF  420
FSDFLLFNLA ILAVFACYRM MATILPHPQV GTKEAATAKS HSVLKSIVNA IRLMLDVQVD  480
VDVRVVKICM ARRKQQTNEE YVGNEEIMSN RAISEGTSDA KLEMVINKRD FLHAELYDPH  540
NLTPLTPSFQ CLE

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_006483326.1	0.0	CRC domain-containing protein TSO1
TrEMBL	A0A2H5NY77	0.0	A0A2H5NY77_CITUN; Uncharacterized protein
STRING	XP_006483326.1	0.0	(Citrus sinensis)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Malvids	OGEM15196	10	15

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT3G22760.1	1e-34	Tesmin/TSO1-like CXC domain-containing protein