PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Neem_21257_f_1

Organism

Azadirachta indica

Taxonomic ID

124943

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Sapindales; Meliaceae; Azadirachta

Family

Dof

Protein Properties

Length: 344aa MW: 37812 Da PI: 8.3822

Description

Dof family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Neem_21257_f_1	genome	NGD	View Nucleic Acid

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	zf-Dof	124.9	2.6e-39	46	106	2	62
zf-Dof 2 kekalkcprCdstntkfCyynnyslsqPryfCkaCrryWtkGGalrnvPvGggrrknkkss 62 +++ lkcprCds+ntkfCyynnyslsqPr+fCkaC+ryWt+GG+lrnvPvGgg+rknk+++ Neem_21257_f_1 46 QQQPLKCPRCDSSNTKFCYYNNYSLSQPRHFCKACKRYWTRGGTLRNVPVGGGCRKNKRVK 106 6899******************************************************976 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
ProDom	PD007478	3.0E-29	45	104	IPR003851	Zinc finger, Dof-type
Pfam	PF02701	1.4E-33	48	104	IPR003851	Zinc finger, Dof-type
PROSITE profile	PS50884	29.525	50	104	IPR003851	Zinc finger, Dof-type
PROSITE pattern	PS01361	0	52	88	IPR003851	Zinc finger, Dof-type

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0006355	Biological Process	regulation of transcription, DNA-templated
GO:0003677	Molecular Function	DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 344 aa Download sequence Send to blast
MLSNCEKMVV ISSTTNEWPQ NQIDEKNLMA STSRLMEKPG QEAPQQQQPL KCPRCDSSNT 60 KFCYYNNYSL SQPRHFCKAC KRYWTRGGTL RNVPVGGGCR KNKRVKRPAS SIDGSSSTPS 120 ANPNPPTQPQ IDISSTSNHI NPLFYGLSRN PSDFNLPFSR FNSRVSSVDT VSGYDLQPQL 180 NALGLGFSTG ILSNDAGDSN YRNGFNPNKQ IQDVVTSNSL LSSYPTFGSS SSTTTTSPTM 240 ASLLASSLHQ QKFMNGGVKS TQGPNHFNTL PSFEELQMTV NGDARMAMKD VKAEDDQNRM 300 DWSVPCQNQM EQLGLSDPTL YWNATSVGSW HDPSNIGSSV TSLI

Sequence ? help Back to Top

Protein Sequence Length: 344 aa Download sequence Send to blast

MLSNCEKMVV ISSTTNEWPQ NQIDEKNLMA STSRLMEKPG QEAPQQQQPL KCPRCDSSNT  60
KFCYYNNYSL SQPRHFCKAC KRYWTRGGTL RNVPVGGGCR KNKRVKRPAS SIDGSSSTPS  120
ANPNPPTQPQ IDISSTSNHI NPLFYGLSRN PSDFNLPFSR FNSRVSSVDT VSGYDLQPQL  180
NALGLGFSTG ILSNDAGDSN YRNGFNPNKQ IQDVVTSNSL LSSYPTFGSS SSTTTTSPTM  240
ASLLASSLHQ QKFMNGGVKS TQGPNHFNTL PSFEELQMTV NGDARMAMKD VKAEDDQNRM  300
DWSVPCQNQM EQLGLSDPTL YWNATSVGSW HDPSNIGSSV TSLI

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_007025580.2	0.0	PREDICTED: dof zinc finger protein DOF1.4
TrEMBL	A0A061GGE9	0.0	A0A061GGE9_THECC; F-box family protein, putative
STRING	EOY28202	0.0	(Theobroma cacao)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Malvids	OGEM4709	26	50

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT1G28310.2	4e-44	Dof family protein