PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Neem_21164_f_1

Organism

Azadirachta indica

Taxonomic ID

124943

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Sapindales; Meliaceae; Azadirachta

Family

HD-ZIP

Protein Properties

Length: 235aa MW: 27155.6 Da PI: 9.3238

Description

HD-ZIP family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Neem_21164_f_1	genome	NGD	View Nucleic Acid

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	Homeobox	59.4	5.9e-19	20	71	5	56
SS--HHHHHHHHHHHHHSSS--HHHHHHHHHHCTS-HHHHHHHHHHHHHHHH CS Homeobox 5 ttftkeqleeLeelFeknrypsaeereeLAkklgLterqVkvWFqNrRakek 56 ++t++q++ Le+ F +n+++++e +++LA++lg+ rqV vW+qN+Ra++k Neem_21164_f_1 20 KRLTQDQVRLLERSFTSNKKLDTELKQKLANQLGVAPRQVAVWYQNKRARWK 71 569************************************************9 PP
2	Homeobox	20.7	7e-07	96	112	39	56
S-HHHHHHHHHHHHHHHH CS Homeobox 39 LterqVkvWFqNrRakek 56 L e++V vW+qN+Ra++k Neem_21164_f_1 96 L-EKDVAVWYQNKRARWK 112 5.679************9 PP
3	HD-ZIP_I/II	97.9	9.6e-32	19	100	3	84
HD-ZIP_I/II 3 krrlskeqvklLEesFeeeekLeperKvelareLglqprqvavWFqnrRARtktkqlEkdyeaLkraydalkeenerLekev 84 k+rl+++qv+lLE+sF++++kL++e K++la++Lg+ prqvavW+qn+RAR+kt+ lE dy+a++ ++++ +e++rLek+v Neem_21164_f_1 19 KKRLTQDQVRLLERSFTSNKKLDTELKQKLANQLGVAPRQVAVWYQNKRARWKTQSLELDYNAIQVKLENALAEKRRLEKDV 100 99*****************************************************************************986 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
PROSITE profile	PS50071	15.791	13	73	IPR001356	Homeobox domain
SMART	SM00389	3.3E-15	15	77	IPR001356	Homeobox domain
SuperFamily	SSF46689	2.57E-16	18	81	IPR009057	Homeodomain-like
CDD	cd00086	1.38E-12	19	74	No hit	No description
Pfam	PF00046	3.0E-16	20	71	IPR001356	Homeobox domain
Gene3D	G3DSA:1.10.10.60	2.6E-18	21	80	IPR009057	Homeodomain-like
PROSITE pattern	PS00027	0	48	71	IPR017970	Homeobox, conserved site
Gene3D	G3DSA:1.10.10.60	1.1E-5	97	121	IPR009057	Homeodomain-like

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0006355	Biological Process	regulation of transcription, DNA-templated
GO:0043565	Molecular Function	sequence-specific DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 235 aa Download sequence Send to blast
MDIFNSLQDQ KHPQKFHGKK RLTQDQVRLL ERSFTSNKKL DTELKQKLAN QLGVAPRQVA 60 VWYQNKRARW KTQSLELDYN AIQVKLENAL AEKRRLEKDV AVWYQNKRAR WKTQSLELDY 120 NAIQVKLENA LAEKRRLEKD VKQLREELRR AQQMLFALSN QKAVETNIST TVVSCNNYST 180 ATSCSDQKGH CSSFSSLLQE DYVHGGDHDH HDDQALQIDH ELYACLIGAG GSAWG

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_006451774.1	7e-81	homeobox-leucine zipper protein ATHB-52
Refseq	XP_006464812.1	7e-81	homeobox-leucine zipper protein ATHB-52
TrEMBL	A0A2H5PUT7	2e-79	A0A2H5PUT7_CITUN; Uncharacterized protein
TrEMBL	V4WEM7	2e-79	V4WEM7_9ROSI; Uncharacterized protein
STRING	XP_006464812.1	3e-80	(Citrus sinensis)
STRING	XP_006451774.1	3e-80	(Citrus clementina)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Malvids	OGEM12107	26	32

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT5G53980.1	1e-28	homeobox protein 52