PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Neem_21128_f_1
Organism
Azadirachta indica
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Sapindales; Meliaceae; Azadirachta
Family ARR-B
Protein Properties Length: 285aa    MW: 31988.5 Da    PI: 5.4562
Description ARR-B family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Neem_21128_f_1genomeNGDView Nucleic Acid
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1G2-like82.93.6e-26212261151
         G2-like   1 kprlrWtpeLHerFveaveqLGGsekAtPktilelmkvkgLtlehvkSHLQ 51 
                     kpr++W+ eLH++Fv+av+qL G +kA+Pk+il+lm+v+gLt+e+v+SHLQ
  Neem_21128_f_1 212 KPRVVWSVELHRKFVNAVNQL-GLDKAVPKKILDLMNVDGLTRENVASHLQ 261
                     79*******************.***************************** PP
2Response_reg84.33.8e-28261341109
                     EEEESSSHHHHHHHHHHHHHTTCEEEEEESSHHHHHHHHHHHH..ESEEEEESSCTTSEHHHHHHHHHHHTTTSEEEEEESTTTHHHHHHHHHTT CS
    Response_reg   1 vlivdDeplvrellrqalekegyeevaeaddgeealellkekd..pDlillDiempgmdGlellkeireeepklpiivvtahgeeedalealkaG 93 
                     vl vdD+p+ +++l+++l+k +y +v+ + ++  al++l+e++  +Dl++ D++mp+mdG++ll+     e++lp+i+++ah++ +++ + +  G
  Neem_21128_f_1  26 VLAVDDDPICLKVLESLLRKCQY-QVTITNQAVTALKMLRENRnkYDLVISDVNMPDMDGFKLLELVGL-EMDLPVIMLSAHSDTKLVMKGITHG 118
                     799********************.***************999889*******************87754.558********************** PP

                     ESEEEESS--HHHHHH CS
    Response_reg  94 akdflsKpfdpeelvk 109
                     a d+l Kp+ +eel +
  Neem_21128_f_1 119 ACDYLLKPVRIEELKN 134
                     *************987 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PIRSFPIRSF0363925.7E-1451262IPR017053Response regulator B-type, plant
SuperFamilySSF521725.27E-3723148IPR011006CheY-like superfamily
Gene3DG3DSA:3.40.50.23004.5E-4423161No hitNo description
SMARTSM004483.0E-3424136IPR001789Signal transduction response regulator, receiver domain
PROSITE profilePS5011044.7325140IPR001789Signal transduction response regulator, receiver domain
PfamPF000721.3E-2526134IPR001789Signal transduction response regulator, receiver domain
CDDcd001567.96E-3027140No hitNo description
PROSITE profilePS5129410.374209268IPR017930Myb domain
SuperFamilySSF466898.06E-17209263IPR009057Homeodomain-like
Gene3DG3DSA:1.10.10.604.4E-26209261IPR009057Homeodomain-like
TIGRFAMsTIGR015573.7E-23212262IPR006447Myb domain, plants
PfamPF002495.8E-7214261IPR001005SANT/Myb domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0000160Biological Processphosphorelay signal transduction system
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 285 aa     Download sequence    Send to blast
MTVEDKMGVS SGEDGATDKF PIGMRVLAVD DDPICLKVLE SLLRKCQYQV TITNQAVTAL  60
KMLRENRNKY DLVISDVNMP DMDGFKLLEL VGLEMDLPVI MLSAHSDTKL VMKGITHGAC  120
DYLLKPVRIE ELKNIWQHVI RRKKIDPKDQ NKSPSQENAH VEAGESGQGA TSTGYSDQNG  180
KSNRKRKDQN EDDDEEVDDD GNENEDSTTQ KKPRVVWSVE LHRKFVNAVN QLGLDKAVPK  240
KILDLMNVDG LTRENVASHL QAMIFSSNSL ISKTLVKFWL NCLTC
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1irz_A6e-22208261154ARR10-B
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtTranscriptional activator that binds specific DNA sequence. Functions as a response regulator involved in His-to-Asp phosphorelay signal transduction system. Phosphorylation of the Asp residue in the receiver domain activates the ability of the protein to promote the transcription of target genes. May directly activate some type-A response regulators in response to cytokinins. {ECO:0000250|UniProtKB:Q940D0}.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_006453634.11e-146two-component response regulator ORR24
SwissprotA2X1N21e-116ORR24_ORYSI; Two-component response regulator ORR24
TrEMBLV4WJC41e-144V4WJC4_9ROSI; Two-component response regulator
STRINGXP_006453634.11e-145(Citrus clementina)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM19812879
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G25180.11e-108response regulator 12