PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Neem_21033_f_1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Sapindales; Meliaceae; Azadirachta
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Family | MYB | ||||||||
Protein Properties | Length: 455aa MW: 51042.5 Da PI: 6.9689 | ||||||||
Description | MYB family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | Myb_DNA-binding | 51.9 | 1.8e-16 | 133 | 178 | 1 | 47 |
TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHH CS Myb_DNA-binding 1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqky 47 rg W + Ed +l ++v+++G+ +W++Ia++++ gR++k+c++rw++ Neem_21033_f_1 133 RGHWRPAEDSKLRELVALYGPQNWNLIAEKLQ-GRSGKSCRLRWFNQ 178 899*****************************.***********996 PP | |||||||
2 | Myb_DNA-binding | 52.9 | 8.7e-17 | 186 | 228 | 2 | 46 |
SSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHH CS Myb_DNA-binding 2 grWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqk 46 ++++eE+e+l a++ +G++ W+ Iar ++ gRt++ +k++w+ Neem_21033_f_1 186 RAFSEEEEERLMAAHRVYGNK-WAMIARLFP-GRTDNAVKNHWHV 228 689******************.*********.***********96 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
PROSITE profile | PS51294 | 18.837 | 128 | 179 | IPR017930 | Myb domain |
SMART | SM00717 | 3.0E-14 | 132 | 181 | IPR001005 | SANT/Myb domain |
SuperFamily | SSF46689 | 1.8E-27 | 133 | 226 | IPR009057 | Homeodomain-like |
Pfam | PF00249 | 3.1E-16 | 133 | 178 | IPR001005 | SANT/Myb domain |
Gene3D | G3DSA:1.10.10.60 | 8.3E-26 | 134 | 186 | IPR009057 | Homeodomain-like |
CDD | cd00167 | 4.01E-13 | 136 | 177 | No hit | No description |
PROSITE profile | PS51294 | 26.559 | 180 | 234 | IPR017930 | Myb domain |
SMART | SM00717 | 1.2E-13 | 184 | 232 | IPR001005 | SANT/Myb domain |
Pfam | PF00249 | 2.8E-13 | 186 | 227 | IPR001005 | SANT/Myb domain |
CDD | cd00167 | 6.31E-11 | 187 | 227 | No hit | No description |
Gene3D | G3DSA:1.10.10.60 | 2.2E-20 | 187 | 233 | IPR009057 | Homeodomain-like |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0003677 | Molecular Function | DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 455 aa Download sequence Send to blast |
MTLQQFHDSS FCQQENESMT TNHYAFYANA SSHSNSSMEN MFSHMGSSLY VCPINYVVTS 60 QNISCSLEDN YNSEVVATAA AAAGDGNEEN SGVDVVAVED VARKRINISE ENPDENSAFV 120 KEMNCVQTKV CSRGHWRPAE DSKLRELVAL YGPQNWNLIA EKLQGRSGKS CRLRWFNQLD 180 PRINKRAFSE EEEERLMAAH RVYGNKWAMI ARLFPGRTDN AVKNHWHVIM ARKYREQSSA 240 YRRRKLNQVV DRKLDEESKG FLRTNVKASY NREVNYSNCL NICNVSFINS SSQSPFTAPN 300 GRSNGTFNMT RSEQAVMING RDFFLGSTSS SSSNSFLPPS RYHGNHKTTF DFFSGCKADD 360 SLGRNSITHC DMMMKNDTNF TVSNPYSHQM IMQQSICSNY NFSTAFSDTV ASASQVSITE 420 LPSPSSQSVA ENNTATSHLD NNISPPFIDF LGVGA |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
1a5j_A | 1e-34 | 133 | 233 | 7 | 107 | B-MYB |
Search in ModeBase |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_024955401.1 | 1e-137 | transcription factor MYB35 | ||||
TrEMBL | A0A061FAA0 | 1e-123 | A0A061FAA0_THECC; Myb domain protein 105, putative | ||||
STRING | EOY14255 | 1e-124 | (Theobroma cacao) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Malvids | OGEM1210 | 28 | 96 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT1G69560.1 | 2e-76 | myb domain protein 105 |