PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
|
Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
---|---|---|---|---|---|---|---|---|---|
TF ID | Neem_20836_f_1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Sapindales; Meliaceae; Azadirachta
|
||||||||
Family | HD-ZIP | ||||||||
Protein Properties | Length: 240aa MW: 27176.6 Da PI: 8.8918 | ||||||||
Description | HD-ZIP family protein | ||||||||
Gene Model |
|
Signature Domain? help Back to Top | |||||||
---|---|---|---|---|---|---|---|
No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | Homeobox | 58.7 | 9.8e-19 | 70 | 122 | 4 | 56 |
-SS--HHHHHHHHHHHHHSSS--HHHHHHHHHHCTS-HHHHHHHHHHHHHHHH CS Homeobox 4 RttftkeqleeLeelFeknrypsaeereeLAkklgLterqVkvWFqNrRakek 56 ++++t eq + Le +F +++++ +++ +LA++lgL rqV vWFqNrRa++k Neem_20836_f_1 70 KRKLTVEQAQLLEMHFGNEHKLESDRKDKLASELGLHPRQVAVWFQNRRARDK 122 5689***********************************************99 PP | |||||||
2 | HD-ZIP_I/II | 113.7 | 1.2e-36 | 69 | 160 | 2 | 93 |
HD-ZIP_I/II 2 kkrrlskeqvklLEesFeeeekLeperKvelareLglqprqvavWFqnrRARtktkqlEkdyeaLkraydalkeenerLekeveeLreelke 93 kkr+l+ eq++lLE++F +e+kLe++rK +la+eLgl+prqvavWFqnrRAR ktk++E+ y++Lk+a+++++ e+ rLe++v++L+e+l++ Neem_20836_f_1 69 KKRKLTVEQAQLLEMHFGNEHKLESDRKDKLASELGLHPRQVAVWFQNRRARDKTKKIEESYASLKTAHENVVVEKGRLESQVAKLKEKLSD 160 9***************************************************************************************9975 PP |
Protein Features ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Database | Entry ID | E-value | Start | End | InterPro ID | Description |
SMART | SM00389 | 5.8E-18 | 67 | 128 | IPR001356 | Homeobox domain |
SuperFamily | SSF46689 | 4.28E-16 | 69 | 131 | IPR009057 | Homeodomain-like |
CDD | cd00086 | 1.74E-14 | 69 | 125 | No hit | No description |
PROSITE profile | PS50071 | 15.661 | 69 | 124 | IPR001356 | Homeobox domain |
Pfam | PF00046 | 6.8E-16 | 70 | 122 | IPR001356 | Homeobox domain |
Gene3D | G3DSA:1.10.10.60 | 3.2E-18 | 71 | 131 | IPR009057 | Homeodomain-like |
PRINTS | PR00031 | 1.3E-5 | 95 | 104 | IPR000047 | Helix-turn-helix motif |
PROSITE pattern | PS00027 | 0 | 99 | 122 | IPR017970 | Homeobox, conserved site |
PRINTS | PR00031 | 1.3E-5 | 104 | 120 | IPR000047 | Helix-turn-helix motif |
Gene Ontology ? help Back to Top | ||||||
---|---|---|---|---|---|---|
GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0009733 | Biological Process | response to auxin | ||||
GO:0043565 | Molecular Function | sequence-specific DNA binding |
Sequence ? help Back to Top |
---|
Protein Sequence Length: 240 aa Download sequence Send to blast |
MIITNSMNHQ AEADNKNMVL LSQYYSPSFF TATAGMVPQQ GEASDTKPKR RQRKKNGGDH 60 NASCLTGLKK RKLTVEQAQL LEMHFGNEHK LESDRKDKLA SELGLHPRQV AVWFQNRRAR 120 DKTKKIEESY ASLKTAHENV VVEKGRLESQ VAKLKEKLSD AEKEIQRLTQ LYDAVSVNST 180 LNPTVAMEME TVNSPFASVD SSFANSNSTF TGYVGYEELH YLAEQNFITA VEWMLSNTQR |
Nucleic Localization Signal ? help Back to Top | |||
---|---|---|---|
No. | Start | End | Sequence |
1 | 52 | 71 | RKKNGGDHNASCLTGLKKRK |
Binding Motif ? help Back to Top | |||
---|---|---|---|
Motif ID | Method | Source | Motif file |
MP00473 | DAP | Transfer from AT4G36740 | Download |
Annotation -- Protein ? help Back to Top | |||||||
---|---|---|---|---|---|---|---|
Source | Hit ID | E-value | Description | ||||
Refseq | XP_006425728.1 | 2e-95 | homeobox-leucine zipper protein ATHB-40 | ||||
Refseq | XP_006466750.1 | 2e-95 | homeobox-leucine zipper protein ATHB-40 | ||||
TrEMBL | A0A067GVJ6 | 2e-94 | A0A067GVJ6_CITSI; Uncharacterized protein | ||||
STRING | XP_006466750.1 | 8e-95 | (Citrus sinensis) | ||||
STRING | XP_006425728.1 | 8e-95 | (Citrus clementina) |
Orthologous Group ? help Back to Top | |||
---|---|---|---|
Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Malvids | OGEM2208 | 26 | 77 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Hit ID | E-value | Description | ||||
AT4G36740.1 | 1e-55 | homeobox protein 40 |