PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Neem_20541_f_1

Organism

Azadirachta indica

Taxonomic ID

124943

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Sapindales; Meliaceae; Azadirachta

Family

NF-YC

Protein Properties

Length: 273aa MW: 30815.2 Da PI: 6.8012

Description

NF-YC family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Neem_20541_f_1	genome	NGD	View Nucleic Acid

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	NF-YC	178.6	5.7e-56	88	192	1	102
NF-YC 1 qlksfwekq...iekatdfknhelPlarikkilkadedvkmisaeaPvllskacelfileltlrswlhaeenkrrtlkksdiaaavtrtdifdfl 92 ql++fw++q ie+++dfknh+lPlarikki+kadedv+misaeaPv+++kace+fileltlrsw+h+eenkrrtl+k+diaaa++rtd+fdfl Neem_20541_f_1 88 QLQMFWSNQmqeIEQTSDFKNHSLPLARIKKIMKADEDVRMISAEAPVIFAKACEMFILELTLRSWIHTEENKRRTLQKNDIAAAISRTDVFDFL 182 89****988889***************************************************************************** PP NF-YC 93 vdivprdelk 102 vdi+prdelk Neem_20541_f_1 183 VDIIPRDELK 192 *****975 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
SuperFamily	SSF47113	1.16E-34	67	182	IPR009072	Histone-fold
Gene3D	G3DSA:1.10.20.10	9.9E-38	101	174	IPR009072	Histone-fold
Pfam	PF00808	2.4E-21	110	173	IPR003958	Transcription factor CBF/NF-Y/archaeal histone domain

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0045893	Biological Process	positive regulation of transcription, DNA-templated
GO:0005634	Cellular Component	nucleus
GO:0005737	Cellular Component	cytoplasm
GO:0046982	Molecular Function	protein heterodimerization activity

Sequence ? help Back to Top
Protein Sequence Length: 273 aa Download sequence Send to blast
MDQPDQTQQQ QQQQPVMGVI AGTGQMTYPP YQTAPMVASA PMVASGTPAV PVHSPTQPPS 60 TFSNSAHQLA FQQAQHFHHQ QQQQQQQQLQ MFWSNQMQEI EQTSDFKNHS LPLARIKKIM 120 KADEDVRMIS AEAPVIFAKA CEMFILELTL RSWIHTEENK RRTLQKNDIA AAISRTDVFD 180 FLVDIIPRDE LKEEGLGVTK ATIPVVGSPA DMPLYYVPSQ HPVPPTGMIM GKPVDQAALY 240 PAQQPRPPMA FMPWPQTQPQ QQQHRRKELP PLL

3D Structure ? help Back to Top

PDB ID	Evalue	Query Start	Query End	Hit Start	Hit End	Description
5g49_B	4e-58	96	188	3	95	NUCLEAR TRANSCRIPTION FACTOR Y SUBUNIT C-3
Search in ModeBase

Nucleic Localization Signal ? help Back to Top

No.	Start	End	Sequence
1	160	166	RRTLQKN

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_006422281.1	1e-137	nuclear transcription factor Y subunit C-2
Refseq	XP_006493757.1	1e-137	nuclear transcription factor Y subunit C-2
Refseq	XP_006493758.1	1e-137	nuclear transcription factor Y subunit C-2
Refseq	XP_024036481.1	1e-137	nuclear transcription factor Y subunit C-2
Refseq	XP_024949451.1	1e-137	nuclear transcription factor Y subunit C-2
TrEMBL	A0A2H5NRC0	1e-136	A0A2H5NRC0_CITUN; Uncharacterized protein
STRING	XP_006493757.1	1e-136	(Citrus sinensis)
STRING	XP_006422281.1	1e-136	(Citrus clementina)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Malvids	OGEM478	28	160

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT1G56170.2	1e-81	nuclear factor Y, subunit C2