PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Neem_20502_f_1

Organism

Azadirachta indica

Taxonomic ID

124943

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Sapindales; Meliaceae; Azadirachta

Family

NAC

Protein Properties

Length: 308aa MW: 34642 Da PI: 8.048

Description

NAC family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Neem_20502_f_1	genome	NGD	View Nucleic Acid

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	NAM	116.8	2.1e-36	48	190	1	128
NAM 1 lppGfrFhPtdeelvveyLkkkvegkklelee.......vikev.diykvePwdLpkkvkaeekewyfFskrdkkyatgkrknratk........ 79 lp+G++F+Ptd+el+ e+L++kve+k+++ + +i+ +i++++P++Lp v+ + + +fF++ +k+y+tg+rk+r+++ Neem_20502_f_1 48 LPAGVKFDPTDQELI-EHLEAKVEAKDMKSHPlidefipTIEGEdGICYTHPEKLP-GVTRDGLSRHFFHRPSKAYTTGTRKRRKIQtecdlqgg 140 799**********.99*****5553344444434666646******.555666799**************73334555544 PP NAM 80 sgyWkatgkdkevlskkgelvglkktLvfy..kgrapkgektdWvmheyrl 128 + +W++tgk+++v++ +g+++g+kk+Lv+y g+++k+ekt+Wvmh+y+l Neem_20502_f_1 141 ETRWHKTGKTRPVMV-NGKQKGCKKILVLYtnFGKNRKPEKTNWVMHQYHL 190 778********.999*******5547999999*******98 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
SuperFamily	SSF101941	4.58E-39	43	209	IPR003441	NAC domain
PROSITE profile	PS51005	33.01	48	209	IPR003441	NAC domain
Pfam	PF02365	9.6E-17	49	190	IPR003441	NAC domain

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0006355	Biological Process	regulation of transcription, DNA-templated
GO:0044212	Molecular Function	transcription regulatory region DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 308 aa Download sequence Send to blast
MSKSSNLASN ISSSDLIDAK LEEHQLCGSK QCPGCGHKLE AKPDWLGLPA GVKFDPTDQE 60 LIEHLEAKVE AKDMKSHPLI DEFIPTIEGE DGICYTHPEK LPGVTRDGLS RHFFHRPSKA 120 YTTGTRKRRK IQTECDLQGG ETRWHKTGKT RPVMVNGKQK GCKKILVLYT NFGKNRKPEK 180 TNWVMHQYHL GQHEEEKEGE LVVSKIFYQT QPRQCNWSDR SATTGEGSSD PNSRRDSGSG 240 SCSSKEIIPH RDEVSGAQVA AAISSYGAID MQQLKSDHFS FVPFRKSFDE VHSLNYFLLS 300 MQSLLHLN

3D Structure ? help Back to Top

PDB ID	Evalue	Query Start	Query End	Hit Start	Hit End	Description
3ulx_A	3e-13	46	190	13	140	Stress-induced transcription factor NAC1
Search in ModeBase

Functional Description ? help Back to Top
Source	Description
UniProt	Transcription activator involved in xylem formation (PubMed:25265867, PubMed:25535195). Promotes the expression of the secondary wall-associated transcription factor MYB46 (PubMed:25265867). Functions upstream of NAC030/VND7, a master switch of xylem vessel differentiation (PubMed:25265867, PubMed:25535195). Acts as upstream regulator of NAC101/VND6 and LBD30/ASL19 (PubMed:25535195). {ECO:0000269\|PubMed:25265867, ECO:0000269\|PubMed:25535195}.

Binding Motif ? help Back to Top
Motif ID	Method	Source	Motif file
MP00460	DAP	Transfer from AT4G29230	Download

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_006451346.2	0.0	LOW QUALITY PROTEIN: NAC domain-containing protein 75
Swissprot	Q9M0F8	1e-147	NAC75_ARATH; NAC domain-containing protein 75
TrEMBL	V4UQ38	0.0	V4UQ38_9ROSI; Uncharacterized protein (Fragment)
STRING	XP_006451346.1	0.0	(Citrus clementina)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Malvids	OGEM6635	26	43

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT4G29230.1	1e-140	NAC domain containing protein 75

Publications ? help Back to Top
Droc G, et al. OryGenesDB: a database for rice reverse genetics. Nucleic Acids Res., 2006. 34(Database issue): p. D736-40 [PMID:16381969] Sakamoto S,Mitsuda N Reconstitution of a secondary cell wall in a secondary cell wall-deficient Arabidopsis mutant. Plant Cell Physiol., 2015. 56(2): p. 299-310 [PMID:25535195]