PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Neem_20222_f_1

Organism

Azadirachta indica

Taxonomic ID

124943

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Sapindales; Meliaceae; Azadirachta

Family

C3H

Protein Properties

Length: 890aa MW: 97454.7 Da PI: 8.8725

Description

C3H family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Neem_20222_f_1	genome	NGD	View Nucleic Acid

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	zf-CCCH	20.3	9.5e-07	719	740	6	27
-SGGGGTS--TTTTT-SS-SSS CS zf-CCCH 6 CrffartGtCkyGdrCkFaHgp 27 C++f +tG C+ G++Ck +H++ Neem_20222_f_1 719 CPTFEATGSCSLGSKCKLHHPK 740 *****************99985 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
SMART	SM00356	1.3	691	717	IPR000571	Zinc finger, CCCH-type
PROSITE profile	PS50103	6.709	691	712	IPR000571	Zinc finger, CCCH-type
PROSITE profile	PS50103	11.206	713	741	IPR000571	Zinc finger, CCCH-type
SMART	SM00356	0.8	718	740	IPR000571	Zinc finger, CCCH-type
Pfam	PF00642	2.2E-4	719	740	IPR000571	Zinc finger, CCCH-type

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0046872	Molecular Function	metal ion binding

Sequence ? help Back to Top
Protein Sequence Length: 890 aa Download sequence Send to blast
PESQSADSSQ VLPTYVESDG CLLEKGDLPS VSTYPALAAD ADGVSTTNSN DEMMEFDSPS 60 NMCSPEILSN VAAMQMLNHE SSSQIPNENA CEIDKIPTEK PVLEANSNLS AHTSPSEHAK 120 INLKSDCIVE SGRLVVRRTM LLPSHDVKNT GHSLALTSEE TYGKKNQPSH TVSRINPSCS 180 SSVFSASRNT TSSTCIRKPR TWHRTESSSA SPVPGNKSSL CTVPQQSQLP KNVAKFQSTS 240 YIRKGNSLVR KPAPVAALPQ VAHGLTSSVY RLNSLGISES KKTTGSDSTV DVIHPPNFLR 300 MGGGNAPLER PRTPPLPVVT KVPNRTTNLA VDCTTSPLAE PLPNGCSETT SDPQKSMEIN 360 SELSASSAHL KISETPAKQT GLANSTEIQG EPNDGTLGTA NEKRITYVKQ KSNQLIAASG 420 DCALSVQDPD KTQVLTSEGY YKRRKNQLIR TSLESHINPT VTSVDGAMTS EGEKASNDIF 480 SRSFSKKRSF KVGKKIRKPL KFSLVWTLNG LQSSKGSDHS SYHQKEATLA VAAVEKKRQQ 540 NGVESFASKT KNRSHSAKSR IFRIGSVRYK MDSSRRTLQR ISDDGSSCTA APNLEKNAKK 600 SYIPRRLVIG NDEYVYVSLI PCSSSLLFLS LKWEFWSFQN ECQIVPISCK VFYHAISWVL 660 FDKLNIQRIL TSLLSGLCTN KNCPYRHVHV NPNASTCEGF LKGYCADGNE CRKKHSYVCP 720 TFEATGSCSL GSKCKLHHPK SRSKGKKSRG SRKQKSTYGR YFGSMLVDDS EPQMTRMSES 780 HSTQDNIDLF IEGKLVDYIS LDFSNEEARE ANDALCGQTT FPDNDASDLQ SDDLDELIKP 840 IRIMNCHFCV DEQILQDKGI ISSFSGGAPR IIQVTGRKPA FVGKRSVQIV

Sequence ? help Back to Top

Protein Sequence Length: 890 aa Download sequence Send to blast

PESQSADSSQ VLPTYVESDG CLLEKGDLPS VSTYPALAAD ADGVSTTNSN DEMMEFDSPS  60
NMCSPEILSN VAAMQMLNHE SSSQIPNENA CEIDKIPTEK PVLEANSNLS AHTSPSEHAK  120
INLKSDCIVE SGRLVVRRTM LLPSHDVKNT GHSLALTSEE TYGKKNQPSH TVSRINPSCS  180
SSVFSASRNT TSSTCIRKPR TWHRTESSSA SPVPGNKSSL CTVPQQSQLP KNVAKFQSTS  240
YIRKGNSLVR KPAPVAALPQ VAHGLTSSVY RLNSLGISES KKTTGSDSTV DVIHPPNFLR  300
MGGGNAPLER PRTPPLPVVT KVPNRTTNLA VDCTTSPLAE PLPNGCSETT SDPQKSMEIN  360
SELSASSAHL KISETPAKQT GLANSTEIQG EPNDGTLGTA NEKRITYVKQ KSNQLIAASG  420
DCALSVQDPD KTQVLTSEGY YKRRKNQLIR TSLESHINPT VTSVDGAMTS EGEKASNDIF  480
SRSFSKKRSF KVGKKIRKPL KFSLVWTLNG LQSSKGSDHS SYHQKEATLA VAAVEKKRQQ  540
NGVESFASKT KNRSHSAKSR IFRIGSVRYK MDSSRRTLQR ISDDGSSCTA APNLEKNAKK  600
SYIPRRLVIG NDEYVYVSLI PCSSSLLFLS LKWEFWSFQN ECQIVPISCK VFYHAISWVL  660
FDKLNIQRIL TSLLSGLCTN KNCPYRHVHV NPNASTCEGF LKGYCADGNE CRKKHSYVCP  720
TFEATGSCSL GSKCKLHHPK SRSKGKKSRG SRKQKSTYGR YFGSMLVDDS EPQMTRMSES  780
HSTQDNIDLF IEGKLVDYIS LDFSNEEARE ANDALCGQTT FPDNDASDLQ SDDLDELIKP  840
IRIMNCHFCV DEQILQDKGI ISSFSGGAPR IIQVTGRKPA FVGKRSVQIV

Annotation -- Nucleotide ? help Back to Top
Source	Hit ID	E-value	Description
GenBank	AM484113	2e-76	AM484113.1 Vitis vinifera, whole genome shotgun sequence, contig VV78X030754.11, clone ENTAV 115.

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_006434296.1	0.0	uncharacterized protein LOC18042948
TrEMBL	A0A2H5PIB3	0.0	A0A2H5PIB3_CITUN; Uncharacterized protein
STRING	XP_006434296.1	0.0	(Citrus clementina)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Malvids	OGEM5780	10	12