PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Neem_20048_f_1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Sapindales; Meliaceae; Azadirachta
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Family | B3 | ||||||||
Protein Properties | Length: 349aa MW: 40135.9 Da PI: 9.9604 | ||||||||
Description | B3 family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | B3 | 54.9 | 1.6e-17 | 13 | 105 | 1 | 100 |
EEEE-..-HHHHTT-EE--HHH.HTT---..--SEEEEEETTS-EEEEEE..EEETTEEEE-TTHHHHHHHHT--TT-EEEEEE-SSSEE..EEE CS B3 1 ffkvltpsdvlksgrlvlpkkfaeehggkkeesktltledesgrsWevkliyrkksgryvltkGWkeFvkangLkegDfvvFkldgrsefelvvk 95 ffkv ++s +++l++p kf++++g + tl ++g Wev l +k ++++++ +GW +Fv+ + +++g f+vF++ ++s+f +v Neem_20048_f_1 13 FFKVILQSTIE-NKMLRIPEKFVRRFGDE--LFSVATLVVPEGGAWEVGL--KKDGRKIWFHDGWIDFVEFHSICAGHFLVFEYRENSSF--HVL 100 77777665555.557***********755..44589999***********..999999**************************988999..*** PP EE-SS CS B3 96 vfrks 100 +f+ks Neem_20048_f_1 101 IFDKS 105 **985 PP | |||||||
2 | B3 | 51.7 | 1.6e-16 | 254 | 346 | 4 | 99 |
E-..-HHHHTT-EE--HHH.HTT---..--SEEEEEETTS-EEEEEE..EEETTEEEE-TTHHHHHHHHT--TT-EEEEEE-SSSEE..EEEEE- CS B3 4 vltpsdvlksgrlvlpkkfaeehggkkeesktltledesgrsWevkliyrkksgryvltkGWkeFvkangLkegDfvvFkldgrsefelvvkvfr 98 t +++ r ++p kfa+++ + ++ k ++++d++g++W v+l + s+++ l++GW+ F k +L gD++vF+l+ ++ l+++v+r Neem_20048_f_1 254 FKTARYNGGYERKYVPAKFADKYLRSDTTAKFIKIQDSDGKEWPVRL---RWSQWCGLKGGWRAFRKGMNLGGGDVCVFELIMKKVIVLKFSVLR 345 556788999999***********445567789***************...6677889***********************997777777777776 PP S CS B3 99 k 99 + Neem_20048_f_1 346 A 346 5 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
Gene3D | G3DSA:2.40.330.10 | 5.0E-25 | 7 | 107 | IPR015300 | DNA-binding pseudobarrel domain |
SuperFamily | SSF101936 | 1.43E-24 | 9 | 107 | IPR015300 | DNA-binding pseudobarrel domain |
CDD | cd10017 | 1.01E-21 | 11 | 103 | No hit | No description |
PROSITE profile | PS50863 | 13.719 | 12 | 105 | IPR003340 | B3 DNA binding domain |
SMART | SM01019 | 7.6E-21 | 13 | 105 | IPR003340 | B3 DNA binding domain |
Pfam | PF02362 | 1.8E-14 | 13 | 104 | IPR003340 | B3 DNA binding domain |
SMART | SM01019 | 2.3E-10 | 251 | 347 | IPR003340 | B3 DNA binding domain |
PROSITE profile | PS50863 | 12.238 | 251 | 347 | IPR003340 | B3 DNA binding domain |
Pfam | PF02362 | 4.2E-15 | 253 | 345 | IPR003340 | B3 DNA binding domain |
CDD | cd10017 | 5.20E-13 | 256 | 345 | No hit | No description |
Gene3D | G3DSA:2.40.330.10 | 1.4E-15 | 261 | 346 | IPR015300 | DNA-binding pseudobarrel domain |
SuperFamily | SSF101936 | 1.29E-14 | 262 | 335 | IPR015300 | DNA-binding pseudobarrel domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0003677 | Molecular Function | DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 349 aa Download sequence Send to blast |
MGAGSRRAEP PHFFKVILQS TIENKMLRIP EKFVRRFGDE LFSVATLVVP EGGAWEVGLK 60 KDGRKIWFHD GWIDFVEFHS ICAGHFLVFE YRENSSFHVL IFDKSACEIE YPSIWKEPKN 120 EEQNSVHGNE MEREDSDECP SNRPSSKMNT PQLQKIQVKP SFGSALGTKR RQKCAMSLES 180 SKLKYGYMTR NRKSKMEETA EMDESRQGKL QGNEMCNSQG SLHHKRHLLR NAENLYASSS 240 LARKMDSKID GTKFKTARYN GGYERKYVPA KFADKYLRSD TTAKFIKIQD SDGKEWPVRL 300 RWSQWCGLKG GWRAFRKGMN LGGGDVCVFE LIMKKVIVLK FSVLRASAE |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Malvids | OGEM1591 | 25 | 78 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT3G18990.1 | 2e-42 | B3 family protein |