PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Neem_20018_f_1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Sapindales; Meliaceae; Azadirachta
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Family | C3H | ||||||||
Protein Properties | Length: 210aa MW: 22223.1 Da PI: 9.2887 | ||||||||
Description | C3H family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | zf-CCCH | 37.6 | 3.6e-12 | 31 | 57 | 1 | 27 |
--S---SGGGGTS--TTTTT-SS-SSS CS zf-CCCH 1 yktelCrffartGtCkyGdrCkFaHgp 27 ++++ C+++++tG Ck+G++C+++H++ Neem_20018_f_1 31 PGEPDCQYYLKTGDCKFGSSCRYHHPR 57 5789*********************96 PP | |||||||
2 | zf-CCCH | 38.2 | 2.5e-12 | 78 | 103 | 2 | 27 |
-S---SGGGGTS--TTTTT-SS-SSS CS zf-CCCH 2 ktelCrffartGtCkyGdrCkFaHgp 27 + +C+f++++G Ck+G++CkF H++ Neem_20018_f_1 78 GVQPCSFYLQNGRCKFGATCKFDHPM 103 6789********************95 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
SMART | SM00356 | 5.2E-6 | 30 | 57 | IPR000571 | Zinc finger, CCCH-type |
PROSITE profile | PS50103 | 15.929 | 30 | 58 | IPR000571 | Zinc finger, CCCH-type |
Pfam | PF00642 | 1.8E-9 | 32 | 57 | IPR000571 | Zinc finger, CCCH-type |
SuperFamily | SSF90229 | 2.35E-6 | 35 | 59 | IPR000571 | Zinc finger, CCCH-type |
Gene3D | G3DSA:4.10.1000.10 | 7.1E-5 | 36 | 57 | IPR000571 | Zinc finger, CCCH-type |
SuperFamily | SSF90229 | 1.06E-6 | 76 | 107 | IPR000571 | Zinc finger, CCCH-type |
PROSITE profile | PS50103 | 15.234 | 76 | 104 | IPR000571 | Zinc finger, CCCH-type |
SMART | SM00356 | 1.1E-6 | 76 | 103 | IPR000571 | Zinc finger, CCCH-type |
Pfam | PF00642 | 1.5E-9 | 78 | 103 | IPR000571 | Zinc finger, CCCH-type |
Gene3D | G3DSA:4.10.1000.10 | 7.7E-6 | 80 | 102 | IPR000571 | Zinc finger, CCCH-type |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0046872 | Molecular Function | metal ion binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 210 aa Download sequence Send to blast |
MPALAGPYPS LPSSAGPSSS GQKEQSFPER PGEPDCQYYL KTGDCKFGSS CRYHHPRDRV 60 LPRANCVLSP LGLPMRPGVQ PCSFYLQNGR CKFGATCKFD HPMGAMRYSP SASSLIESPV 120 TPYPVGSLLS TMAPASSSSD LRPELISGSK KDSLLSRIPS SGSTSSSSIG LIFSQTGSVP 180 LSDLQLSGQS SVPLSSSRST RQGVEVRRSS |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_021906884.1 | 1e-112 | zinc finger CCCH domain-containing protein 32 isoform X1 | ||||
Swissprot | Q84W91 | 8e-82 | C3H32_ARATH; Zinc finger CCCH domain-containing protein 32 | ||||
TrEMBL | A0A2C9WP71 | 1e-109 | A0A2C9WP71_MANES; Uncharacterized protein | ||||
STRING | XP_006479891.1 | 1e-108 | (Citrus sinensis) | ||||
STRING | XP_006444253.1 | 1e-108 | (Citrus clementina) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Malvids | OGEM15746 | 9 | 14 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT2G47850.2 | 9e-66 | C3H family protein |