PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Neem_19919_f_1

Organism

Azadirachta indica

Taxonomic ID

124943

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Sapindales; Meliaceae; Azadirachta

Family

HD-ZIP

Protein Properties

Length: 358aa MW: 40197.9 Da PI: 5.4753

Description

HD-ZIP family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Neem_19919_f_1	genome	NGD	View Nucleic Acid

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	Homeobox	55.7	8.2e-18	54	119	1	56
TT--SS--HHHHHHHHHH..........HHHSSS--HHHHHHHHHHCTS-HHHHHHHHHHHHHHHH CS Homeobox 1 rrkRttftkeqleeLeel..........FeknrypsaeereeLAkklgLterqVkvWFqNrRakek 56 ++k +++t++q++eLe++ F+++++p++++r eL+k+lgL+ +q+k+WFqNrR+++k Neem_19919_f_1 54 KKKYHRHTPHQIQELEAYgllisfsfnfFKECPHPDEKQRSELSKRLGLESKQIKFWFQNRRTQMK 119 79999*********865555555444889******************************999 PP
2	START	34.8	4e-12	271	347	2	69
HHHHHHHHHHHHHHHC-TT-EEEE....EXCCTTEEEEEEESSS......SCEEEEEEEECCSCHHHHHHHHHCCCG CS START 2 laeeaaqelvkkalaeepgWvkss....esengdevlqkfeeskv.....dsgealrasgvvdmvlallveellddk 69 la++a++el+k+a+a++p+W ks + +n++e++++f++ + + +ea+r+++vv+ ++ l e+l+d Neem_19919_f_1 271 LALTAMDELIKMAQADAPLWIKSLdgerDVLNREEYMRTFTPCIGmkpngFATEASRETAVVIINSSALIETLMDAV 347 6899******************999999*******998899*************************976 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
Gene3D	G3DSA:1.10.10.60	6.8E-21	40	123	IPR009057	Homeodomain-like
SuperFamily	SSF46689	3.18E-17	41	121	IPR009057	Homeodomain-like
PROSITE profile	PS50071	14.398	51	121	IPR001356	Homeobox domain
SMART	SM00389	9.0E-14	53	125	IPR001356	Homeobox domain
CDD	cd00086	1.49E-18	54	122	No hit	No description
Pfam	PF00046	2.6E-15	54	119	IPR001356	Homeobox domain
PRINTS	PR00031	5.0E-5	92	101	IPR000047	Helix-turn-helix motif
PROSITE pattern	PS00027	0	96	119	IPR017970	Homeobox, conserved site
PRINTS	PR00031	5.0E-5	101	117	IPR000047	Helix-turn-helix motif
PROSITE profile	PS50848	12.205	261	345	IPR002913	START domain
Pfam	PF01852	4.4E-7	271	346	IPR002913	START domain

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0006355	Biological Process	regulation of transcription, DNA-templated
GO:0008289	Molecular Function	lipid binding
GO:0043565	Molecular Function	sequence-specific DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 358 aa Download sequence Send to blast
MDAHGDMGLL GEHFDPSIVG RIREDGYESR SGSDNVEGAS GDDLETNDDG PPRKKKYHRH 60 TPHQIQELEA YGLLISFSFN FFKECPHPDE KQRSELSKRL GLESKQIKFW FQNRRTQMKT 120 QMERHENVIL RQEHDKLRAE NDMLKEAMKN PICNNCGGPA VPGNVSNYEL QQLRIENARY 180 KDELGRICIL ANKFLGRPLT SSANTMAPQC LDSSLELAVG RNGFGSITNI SGSMMPGIEF 240 VEGPVMSLMK PPITGMMGNE MPYERNMLID LALTAMDELI KMAQADAPLW IKSLDGERDV 300 LNREEYMRTF TPCIGMKPNG FATEASRETA VVIINSSALI ETLMDAVCHL KTLVLMAP

Sequence ? help Back to Top

Protein Sequence Length: 358 aa Download sequence Send to blast

MDAHGDMGLL GEHFDPSIVG RIREDGYESR SGSDNVEGAS GDDLETNDDG PPRKKKYHRH  60
TPHQIQELEA YGLLISFSFN FFKECPHPDE KQRSELSKRL GLESKQIKFW FQNRRTQMKT  120
QMERHENVIL RQEHDKLRAE NDMLKEAMKN PICNNCGGPA VPGNVSNYEL QQLRIENARY  180
KDELGRICIL ANKFLGRPLT SSANTMAPQC LDSSLELAVG RNGFGSITNI SGSMMPGIEF  240
VEGPVMSLMK PPITGMMGNE MPYERNMLID LALTAMDELI KMAQADAPLW IKSLDGERDV  300
LNREEYMRTF TPCIGMKPNG FATEASRETA VVIINSSALI ETLMDAVCHL KTLVLMAP

Functional Description ? help Back to Top
Source	Description
UniProt	Probable transcription factor involved in the regulation of the tissue-specific accumulation of anthocyanins and in cellular organization of the primary root. {ECO:0000269\|PubMed:10402424}.

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_024958654.1	0.0	homeobox-leucine zipper protein ANTHOCYANINLESS 2-like isoform X3
Swissprot	Q0WV12	1e-114	ANL2_ARATH; Homeobox-leucine zipper protein ANTHOCYANINLESS 2
TrEMBL	A0A067EY32	0.0	A0A067EY32_CITSI; Uncharacterized protein
TrEMBL	A0A067F1T0	0.0	A0A067F1T0_CITSI; Uncharacterized protein
STRING	XP_006490345.1	0.0	(Citrus sinensis)

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT4G00730.2	1e-118	HD-ZIP family protein

Publications ? help Back to Top
Duarte JM, et al. Expression pattern shifts following duplication indicative of subfunctionalization and neofunctionalization in regulatory genes of Arabidopsis. Mol. Biol. Evol., 2006. 23(2): p. 469-78 [PMID:16280546]