PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Neem_19880_f_1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Sapindales; Meliaceae; Azadirachta
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Family | HB-other | ||||||||
Protein Properties | Length: 328aa MW: 37276.3 Da PI: 7.6212 | ||||||||
Description | HB-other family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | Homeobox | 60.9 | 2e-19 | 28 | 79 | 5 | 56 |
SS--HHHHHHHHHHHHHSSS--HHHHHHHHHHCTS-HHHHHHHHHHHHHHHH CS Homeobox 5 ttftkeqleeLeelFeknrypsaeereeLAkklgLterqVkvWFqNrRakek 56 +++t++q++ Le++F+ +++p++++r++L+++lgL+ +q+k+WFqN+R++ k Neem_19880_f_1 28 HRHTAYQIQSLETFFKDCPHPDENQRRQLSRELGLDPKQIKFWFQNKRTQTK 79 6789********************************************9987 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
Gene3D | G3DSA:1.10.10.60 | 9.2E-21 | 7 | 75 | IPR009057 | Homeodomain-like |
SuperFamily | SSF46689 | 7.52E-19 | 10 | 82 | IPR009057 | Homeodomain-like |
PROSITE profile | PS50071 | 16.665 | 21 | 81 | IPR001356 | Homeobox domain |
SMART | SM00389 | 2.1E-16 | 21 | 85 | IPR001356 | Homeobox domain |
CDD | cd00086 | 9.55E-16 | 24 | 82 | No hit | No description |
Pfam | PF00046 | 5.7E-17 | 28 | 79 | IPR001356 | Homeobox domain |
PROSITE pattern | PS00027 | 0 | 56 | 79 | IPR017970 | Homeobox, conserved site |
PROSITE profile | PS50848 | 11.127 | 223 | 328 | IPR002913 | START domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0008289 | Molecular Function | lipid binding | ||||
GO:0043565 | Molecular Function | sequence-specific DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 328 aa Download sequence Send to blast |
MDFVARNGSN SGDEQEHSNS RKGKKTFHRH TAYQIQSLET FFKDCPHPDE NQRRQLSREL 60 GLDPKQIKFW FQNKRTQTKA QNERADNSIL RAENERIQCE NLAIREALKN VICPACGGPP 120 FGEEERQRSL EKLQLENAQL KEEASTPSFH EKVSNLLAKY IGKPISQINP LMPVPISTPT 180 SGPVVDHPVP VPAVFPIQDM DLDLNSSGNS ENIPLTFQLK GISDVDKALM VESVNSAMDQ 240 LIRLLQINEP LWIKSSSDGR YTIHRDSYEK IFPRVSHFKT STSRLESSKC SGMVTMNAMQ 300 LVDVFLDSVS FHNYSLPVKH KIDLIIYR |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_002526595.2 | 1e-141 | homeobox-leucine zipper protein ROC8 isoform X2 | ||||
Refseq | XP_015579295.1 | 1e-141 | homeobox-leucine zipper protein ROC8 isoform X3 | ||||
TrEMBL | A0A2H5PLL6 | 1e-134 | A0A2H5PLL6_CITUN; Uncharacterized protein | ||||
TrEMBL | V4S673 | 1e-134 | V4S673_9ROSI; Uncharacterized protein | ||||
STRING | XP_006421085.1 | 1e-135 | (Citrus clementina) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Malvids | OGEM3004 | 26 | 65 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT1G73360.1 | 2e-85 | homeodomain GLABROUS 11 |