PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Neem_19785_f_1
Organism
Azadirachta indica
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Sapindales; Meliaceae; Azadirachta
Family MYB_related
Protein Properties Length: 84aa    MW: 9613.66 Da    PI: 9.7961
Description MYB_related family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Neem_19785_f_1genomeNGDView Nucleic Acid
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Myb_DNA-binding28.34.2e-091359246
                     SSS-HHHHHHHHHHHHHTTTT...-HHHHHHHHTTTS-HHHHHHHHHH CS
  Myb_DNA-binding  2 grWTteEdellvdavkqlGgg...tWktIartmgkgRtlkqcksrwqk 46
                       WT    +++ +a + + ++   +W  Iar +g g+t +++k ++  
   Neem_19785_f_1 13 STWTVKQNKQFERALAVYDKEtpdRWQNIARAVG-GKTVEEVKKHYEV 59
                     57*****************99*************.**********975 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS512939.9581065IPR017884SANT domain
SMARTSM007172.0E-81163IPR001005SANT/Myb domain
PfamPF002491.9E-61358IPR001005SANT/Myb domain
CDDcd001676.21E-71461No hitNo description
Gene3DG3DSA:1.10.10.601.1E-61467IPR009057Homeodomain-like
SuperFamilySSF466896.08E-131568IPR009057Homeodomain-like
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 84 aa     Download sequence    Send to blast
MASNSLNTRN STSTWTVKQN KQFERALAVY DKETPDRWQN IARAVGGKTV EEVKKHYEVL  60
VKDIRDIEAG KYPHPNYRST GSSD
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
2cjj_A3e-34783379RADIALIS
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtProbable transcription factor. {ECO:0000250}.
UniProtProbable transcription factor. {ECO:0000250}.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_006383186.18e-40protein RADIALIS-like 3
SwissprotQ1A1731e-34RADL6_ARATH; Protein RADIALIS-like 6
SwissprotQ6NNN01e-34RADL3_ARATH; Protein RADIALIS-like 3
TrEMBLB9MXN32e-38B9MXN3_POPTR; Uncharacterized protein
STRINGPOPTR_0005s12390.13e-39(Populus trichocarpa)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM22128198
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G75250.22e-31RAD-like 6