PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Neem_19782_f_1
Organism
Azadirachta indica
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Sapindales; Meliaceae; Azadirachta
Family NF-YB
Protein Properties Length: 144aa    MW: 15934 Da    PI: 5.6925
Description NF-YB family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Neem_19782_f_1genomeNGDView Nucleic Acid
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1NF-YB180.81.2e-5625118194
           NF-YB   1 vreqdrflPianvsrimkkvlPanakiskdaketvqecvsefisfvtseasdkcqrekrktingddllwalatlGfedyveplkvylkkyrele 94 
                     vreqdr+lPian+srimkk+lPan+ki+kdak+tvqecvsefisf+tseasdkcq+ekrktingddllwa+atlGfedy+eplk+yl++yre+ 
  Neem_19782_f_1  25 VREQDRYLPIANISRIMKKALPANGKIAKDAKDTVQECVSEFISFITSEASDKCQKEKRKTINGDDLLWAMATLGFEDYIEPLKAYLMRYREFA 118
                     69******************************************************************************************86 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:1.10.20.106.3E-5320121IPR009072Histone-fold
SuperFamilySSF471132.79E-3928122IPR009072Histone-fold
PfamPF008081.2E-283195IPR003958Transcription factor CBF/NF-Y/archaeal histone domain
PRINTSPR006154.1E-215977No hitNo description
PROSITE patternPS0068506278IPR003956Transcription factor, NFYB/HAP3, conserved site
PRINTSPR006154.1E-217896No hitNo description
PRINTSPR006154.1E-2197115No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0043565Molecular Functionsequence-specific DNA binding
GO:0046982Molecular Functionprotein heterodimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 144 aa     Download sequence    Send to blast
MADAPTSPAG GSHESGGEQS PHSGVREQDR YLPIANISRI MKKALPANGK IAKDAKDTVQ  60
ECVSEFISFI TSEASDKCQK EKRKTINGDD LLWAMATLGF EDYIEPLKAY LMRYREFALQ  120
SPLNYVNPQA QGQHMIVPSM QGNE
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1n1j_A1e-4724116193NF-YB
4awl_B9e-4824116294NUCLEAR TRANSCRIPTION FACTOR Y SUBUNIT BETA
4csr_A9e-4824116294NUCLEAR TRANSCRIPTION FACTOR Y SUBUNIT BETA
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtComponent of the NF-Y/HAP transcription factor complex. The NF-Y complex stimulates the transcription of various genes by recognizing and binding to a CCAAT motif in promoters.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_002523912.12e-93nuclear transcription factor Y subunit B-1
RefseqXP_006436200.12e-93nuclear transcription factor Y subunit B-1 isoform X1
RefseqXP_006485940.12e-93nuclear transcription factor Y subunit B-1
SwissprotQ8VYK43e-67NFYB8_ARATH; Nuclear transcription factor Y subunit B-8
TrEMBLA0A067DSP62e-92A0A067DSP6_CITSI; Uncharacterized protein
TrEMBLV4VAZ52e-92V4VAZ5_9ROSI; Uncharacterized protein
STRINGXP_006485940.19e-93(Citrus sinensis)
STRINGXP_002523912.18e-93(Ricinus communis)
STRINGXP_006436200.19e-93(Citrus clementina)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM14802794
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G37060.31e-69nuclear factor Y, subunit B8
Publications ? help Back to Top
  1. Zhao H, et al.
    The Arabidopsis thaliana Nuclear Factor Y Transcription Factors.
    Front Plant Sci, 2016. 7: p. 2045
    [PMID:28119722]