PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Neem_19533_f_1
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Sapindales; Meliaceae; Azadirachta
Family Dof
Protein Properties Length: 253aa    MW: 27745 Da    PI: 9.9794
Description Dof family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Neem_19533_f_1genomeNGDView Nucleic Acid
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-Dof120.55.9e-383292262
          zf-Dof  2 kekalkcprCdstntkfCyynnyslsqPryfCkaCrryWtkGGalrnvPvGggrrknkkss 62
                    +++ ++cprC+s ntkfCyynnyslsqPryfCk+CrryWt+GG+lrnvPvGgg+rk k+++
  Neem_19533_f_1 32 QQQPQRCPRCESLNTKFCYYNNYSLSQPRYFCKTCRRYWTQGGTLRNVPVGGGCRKGKRTK 92
                    68899***************************************************99976 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PfamPF027011.2E-323490IPR003851Zinc finger, Dof-type
PROSITE profilePS5088428.643690IPR003851Zinc finger, Dof-type
PROSITE patternPS0136103874IPR003851Zinc finger, Dof-type
ProDomPD0074783.0E-164281IPR003851Zinc finger, Dof-type
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 253 aa     Download sequence    Send to blast
MQQERGGSEE KKPQNSQDRR LKPMQGGDNQ QQQQPQRCPR CESLNTKFCY YNNYSLSQPR  60
YFCKTCRRYW TQGGTLRNVP VGGGCRKGKR TKTSSSGENS RSSQSLPPAP PQQVQQNLTT  120
AQSILSSNPL ITTGPVLRTK EPGNLAAPSS ISSMGSFYPT GGFLSSLASI QPSNHPQPFN  180
HQPVNQALNV GAGDQMGGSS NLGLLQGYST VPPFGSSQHQ QIQQTQIYLM GNRDKIVNPM  240
YPPSEESLIH SLI
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankLN6818759e-40LN681875.1 Cucumis melo genomic scaffold, anchoredscaffold00007.
GenBankLN7132629e-40LN713262.1 Cucumis melo genomic chromosome, chr_8.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_016698133.11e-100PREDICTED: dof zinc finger protein DOF1.2-like
RefseqXP_016698134.11e-100PREDICTED: dof zinc finger protein DOF1.2-like
RefseqXP_016698136.11e-100PREDICTED: dof zinc finger protein DOF1.2-like
RefseqXP_016698137.11e-100PREDICTED: dof zinc finger protein DOF1.2-like
TrEMBLA0A2P5X7871e-100A0A2P5X787_GOSBA; Uncharacterized protein
STRINGGorai.009G168400.11e-95(Gossypium raimondii)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM15986915
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G28510.12e-21Dof family protein