PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Neem_19488_f_1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Sapindales; Meliaceae; Azadirachta
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Family | STAT | ||||||||
Protein Properties | Length: 762aa MW: 85592.6 Da PI: 6.6826 | ||||||||
Description | STAT family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | STAT | 196.8 | 2.1e-61 | 199 | 316 | 1 | 118 |
STAT 1 ldvvllnalgqpvekdvevvasLlyadsglvveksddaeapLLisydGvefssedrplkllrGrasfklkisqLsskcdnrLfrikfeipklkky 95 ldvvllna+gqpv+kd+ev asLlyad+g +vek++d eapLL+sydG+ef+s+drp+k+l+GrasfklkisqLsskcdnrLfri+fe++kl + Neem_19488_f_1 199 LDVVLLNAFGQPVNKDMEVTASLLYADTGGLVEKTNDGEAPLLTSYDGIEFASYDRPSKILHGRASFKLKISQLSSKCDNRLFRIRFEVLKLAGF 293 8********************************************************************************************** PP STAT 96 pfleavskpirCisrsrntrsss 118 pflea+s+ irCisr+r++r+ Neem_19488_f_1 294 PFLEALSRAIRCISRNRTVRTCP 316 ******************99865 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
Gene3D | G3DSA:3.30.505.10 | 8.5E-6 | 578 | 633 | IPR000980 | SH2 domain |
SuperFamily | SSF55550 | 2.09E-8 | 580 | 652 | IPR000980 | SH2 domain |
PROSITE profile | PS50001 | 9.351 | 583 | 643 | IPR000980 | SH2 domain |
Sequence ? help Back to Top |
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Protein Sequence Length: 762 aa Download sequence Send to blast |
MQVDIGGTAP FLALNEKKIL MLFPLISLHD GAPEPGNPTS FAAIPQASIA TEFPLEKWIH 60 VGCKYLSSLP DQMQFAWCIL KCFHCGLEST LLNVMVSTGS VRLHIDREIV AERILYSSSR 120 KDSMSNSSKK ITLVGNDSQG YVHDAKILPL NFSVNDHYAK GPPLQLSIDT SSASEIEEDC 180 DGVWSIVGGK ASCRRIFSLD VVLLNAFGQP VNKDMEVTAS LLYADTGGLV EKTNDGEAPL 240 LTSYDGIEFA SYDRPSKILH GRASFKLKIS QLSSKCDNRL FRIRFEVLKL AGFPFLEALS 300 RAIRCISRNR TVRTCPIICK KTPAAIHPLD GSQSCGFDDG SVEIQHNTVR EAKPSPSSKR 360 VRLEQEKISA MEQPEGECDS HPWTANKAEN AFGKASDGRR ENLEEVEISP SDSESTGARN 420 SSFKSNENSV SDLTIFKYCL GSLTERSLLL KEIATSFSDE EILEFAHQVS IYSGCSHHRY 480 QIIIAKRLIE EGRNAWNMIS QNNHPVHWDS AVFEIEEQFM KICCCSIRSL TQQDFDLLRR 540 IAGCQDYLAQ ENFEKLWCWL YPVAFTLSRD WINTTWKSTS PKWIEGFITK EEAERSLHGP 600 RGLQEPGTFV LRFPTSRSWP HPDAGSLIVT YVGSDYTLHH RQVSVDYIYR DMEVKPLQDL 660 LMLEPELSRL GRQDISQLQL FLFSFTSLIL PISGTKSNRP TLIPTEKKGR VEGHGEVAFA 720 FKFGSRESSC LTRLHAHLLI LLASLIPKLL HQFQKQVAEI LW |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_006442321.1 | 0.0 | SH2 domain-containing protein A isoform X1 | ||||
Swissprot | Q56XZ1 | 0.0 | SHB_ARATH; SH2 domain-containing protein B | ||||
TrEMBL | V4U062 | 0.0 | V4U062_9ROSI; Uncharacterized protein | ||||
STRING | XP_006442321.1 | 0.0 | (Citrus clementina) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Malvids | OGEM5205 | 26 | 45 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT1G78540.1 | 0.0 | SH2 domain protein B |
Publications ? help Back to Top | |||
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