PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Neem_19488_f_1
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Sapindales; Meliaceae; Azadirachta
Family STAT
Protein Properties Length: 762aa    MW: 85592.6 Da    PI: 6.6826
Description STAT family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Neem_19488_f_1genomeNGDView Nucleic Acid
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1STAT196.82.1e-611993161118
            STAT   1 ldvvllnalgqpvekdvevvasLlyadsglvveksddaeapLLisydGvefssedrplkllrGrasfklkisqLsskcdnrLfrikfeipklkky 95 
                     ldvvllna+gqpv+kd+ev asLlyad+g +vek++d eapLL+sydG+ef+s+drp+k+l+GrasfklkisqLsskcdnrLfri+fe++kl  +
  Neem_19488_f_1 199 LDVVLLNAFGQPVNKDMEVTASLLYADTGGLVEKTNDGEAPLLTSYDGIEFASYDRPSKILHGRASFKLKISQLSSKCDNRLFRIRFEVLKLAGF 293
                     8********************************************************************************************** PP

            STAT  96 pfleavskpirCisrsrntrsss 118
                     pflea+s+ irCisr+r++r+  
  Neem_19488_f_1 294 PFLEALSRAIRCISRNRTVRTCP 316
                     ******************99865 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:3.30.505.108.5E-6578633IPR000980SH2 domain
SuperFamilySSF555502.09E-8580652IPR000980SH2 domain
PROSITE profilePS500019.351583643IPR000980SH2 domain
Sequence ? help Back to Top
Protein Sequence    Length: 762 aa     Download sequence    Send to blast
MQVDIGGTAP FLALNEKKIL MLFPLISLHD GAPEPGNPTS FAAIPQASIA TEFPLEKWIH  60
VGCKYLSSLP DQMQFAWCIL KCFHCGLEST LLNVMVSTGS VRLHIDREIV AERILYSSSR  120
KDSMSNSSKK ITLVGNDSQG YVHDAKILPL NFSVNDHYAK GPPLQLSIDT SSASEIEEDC  180
DGVWSIVGGK ASCRRIFSLD VVLLNAFGQP VNKDMEVTAS LLYADTGGLV EKTNDGEAPL  240
LTSYDGIEFA SYDRPSKILH GRASFKLKIS QLSSKCDNRL FRIRFEVLKL AGFPFLEALS  300
RAIRCISRNR TVRTCPIICK KTPAAIHPLD GSQSCGFDDG SVEIQHNTVR EAKPSPSSKR  360
VRLEQEKISA MEQPEGECDS HPWTANKAEN AFGKASDGRR ENLEEVEISP SDSESTGARN  420
SSFKSNENSV SDLTIFKYCL GSLTERSLLL KEIATSFSDE EILEFAHQVS IYSGCSHHRY  480
QIIIAKRLIE EGRNAWNMIS QNNHPVHWDS AVFEIEEQFM KICCCSIRSL TQQDFDLLRR  540
IAGCQDYLAQ ENFEKLWCWL YPVAFTLSRD WINTTWKSTS PKWIEGFITK EEAERSLHGP  600
RGLQEPGTFV LRFPTSRSWP HPDAGSLIVT YVGSDYTLHH RQVSVDYIYR DMEVKPLQDL  660
LMLEPELSRL GRQDISQLQL FLFSFTSLIL PISGTKSNRP TLIPTEKKGR VEGHGEVAFA  720
FKFGSRESSC LTRLHAHLLI LLASLIPKLL HQFQKQVAEI LW
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_006442321.10.0SH2 domain-containing protein A isoform X1
SwissprotQ56XZ10.0SHB_ARATH; SH2 domain-containing protein B
TrEMBLV4U0620.0V4U062_9ROSI; Uncharacterized protein
STRINGXP_006442321.10.0(Citrus clementina)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM52052645
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G78540.10.0SH2 domain protein B
Publications ? help Back to Top
  1. Yamada Y,Wang HY,Fukuzawa M,Barton GJ,Williams JG
    A new family of transcription factors.
    Development, 2008. 135(18): p. 3093-101
    [PMID:18701541]