PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Neem_19393_f_1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Sapindales; Meliaceae; Azadirachta
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Family | HD-ZIP | ||||||||
Protein Properties | Length: 770aa MW: 85517.2 Da PI: 5.4447 | ||||||||
Description | HD-ZIP family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | Homeobox | 67.2 | 2.2e-21 | 88 | 143 | 1 | 56 |
TT--SS--HHHHHHHHHHHHHSSS--HHHHHHHHHHCTS-HHHHHHHHHHHHHHHH CS Homeobox 1 rrkRttftkeqleeLeelFeknrypsaeereeLAkklgLterqVkvWFqNrRakek 56 +++ +++t++q++e+e+lF+++++p+ ++r +L+++lgL+ rqVk+WFqNrR+++k Neem_19393_f_1 88 KKRYHRHTAHQIQEMEALFKECPHPDDKQRMKLSQELGLKPRQVKFWFQNRRTQMK 143 688999***********************************************998 PP | |||||||
2 | START | 167.6 | 8.2e-53 | 285 | 509 | 2 | 206 |
HHHHHHHHHHHHHHHC-TT-EEEEEXCCTTEEEEEEESSS..............SCEEEEEEEECCSCHHHHHHHHHCCCGGCT-TT-S....EE CS START 2 laeeaaqelvkkalaeepgWvkssesengdevlqkfeeskv.............dsgealrasgvvdmvlallveellddkeqWdetla....ka 79 la + ++el+k+ a+ep+Wv+s eng+evl +e ++ +++ea r+++vv+m++ +lv ++ld + +W e ++ +a Neem_19393_f_1 285 LAISSMNELIKMCHANEPLWVRSN--ENGKEVLNLEEHARIfpwplnlkqhsseFRTEATRDTAVVIMNSITLVDTFLDAN-KWMELFPsivaRA 376 77899*******************..*******999888889***************************************.******99999** PP EEEEEECTT.....EEEEEEEEXXTTXX-SSX.EEEEEEEEEEE..TTS-EEEEEEEEE-TTS--.-TTSEE-EESSEEEEEEEECTCEEEEEEE CS START 80 etlevissg.....galqlmvaelqalsplvp.RdfvfvRyirq.lgagdwvivdvSvdseqkppesssvvRaellpSgiliepksnghskvtwv 167 +t++vi sg g lqlm+aelq+ splvp R+ +f+Ry++q ++g+w+ivd +ds ++ ++s+ +++pSg++i++++ng+s+vtwv Neem_19393_f_1 377 KTIQVIASGvsgasGSLQLMYAELQVVSPLVPtRETYFLRYCQQnVEEGTWAIVDFPIDSFHENI-QPSFPLYRRRPSGCVIQDMPNGYSRVTWV 470 ********************************************99*************999998.67777777********************* PP E-EE--SSXXHHHHHHHHHHHHHHHHHHHHHHTXXXXXX CS START 168 ehvdlkgrlphwllrslvksglaegaktwvatlqrqcek 206 eh++++++ +h+++ ++v sg+a+ga++w++ lqrqce+ Neem_19393_f_1 471 EHAEMEEKPVHQIFSQFVYSGMAFGANRWLSVLQRQCER 509 *************************************97 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
SuperFamily | SSF46689 | 2.84E-20 | 78 | 146 | IPR009057 | Homeodomain-like |
Gene3D | G3DSA:1.10.10.60 | 1.3E-21 | 82 | 151 | IPR009057 | Homeodomain-like |
PROSITE profile | PS50071 | 17.281 | 85 | 145 | IPR001356 | Homeobox domain |
SMART | SM00389 | 3.7E-20 | 86 | 149 | IPR001356 | Homeobox domain |
CDD | cd00086 | 4.90E-19 | 88 | 146 | No hit | No description |
Pfam | PF00046 | 7.4E-19 | 88 | 143 | IPR001356 | Homeobox domain |
PROSITE pattern | PS00027 | 0 | 120 | 143 | IPR017970 | Homeobox, conserved site |
PROSITE profile | PS50848 | 46.142 | 275 | 512 | IPR002913 | START domain |
SuperFamily | SSF55961 | 3.19E-33 | 276 | 511 | No hit | No description |
CDD | cd08875 | 2.88E-119 | 279 | 508 | No hit | No description |
SMART | SM00234 | 6.1E-36 | 284 | 509 | IPR002913 | START domain |
Pfam | PF01852 | 1.1E-44 | 285 | 509 | IPR002913 | START domain |
Gene3D | G3DSA:3.30.530.20 | 2.4E-5 | 359 | 493 | IPR023393 | START-like domain |
SuperFamily | SSF55961 | 3.41E-11 | 546 | 738 | No hit | No description |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0048497 | Biological Process | maintenance of floral organ identity | ||||
GO:0008289 | Molecular Function | lipid binding | ||||
GO:0043565 | Molecular Function | sequence-specific DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 770 aa Download sequence Send to blast |
MYGDCQVMSN MGGGNIVSSE TLFSSPSTVQ NPNFNFMPFH SFPHIAPKEE NGLLMRSKED 60 MESGSGSEQF EEKSGNELES SEQQQPKKKR YHRHTAHQIQ EMEALFKECP HPDDKQRMKL 120 SQELGLKPRQ VKFWFQNRRT QMKAQQDRAD NAILRAENET LKNENYRLQA ELRSVICPNC 180 GGPAILGGIS FEDLRLENAR LREELERVCC LASRYSGRPV QAMAPAPPMI PPSLDLDMNI 240 YSRHFAVPMA TCTDIMPMPM LPETSAFPET GLILMEEEKS IAMELAISSM NELIKMCHAN 300 EPLWVRSNEN GKEVLNLEEH ARIFPWPLNL KQHSSEFRTE ATRDTAVVIM NSITLVDTFL 360 DANKWMELFP SIVARAKTIQ VIASGVSGAS GSLQLMYAEL QVVSPLVPTR ETYFLRYCQQ 420 NVEEGTWAIV DFPIDSFHEN IQPSFPLYRR RPSGCVIQDM PNGYSRVTWV EHAEMEEKPV 480 HQIFSQFVYS GMAFGANRWL SVLQRQCERI ASLMARNIAD LGVIPSPEAR KNLMRLAQRM 540 IGTFCVNIST SSGQSWTALS DSCADTVRIT TRKITEPGQP NGVILCAAST TWLPYPHYQV 600 FDLLRDERRR SQVASNSSQH VELMLQESCT DQCGSLVVYT TIDVDSIQLA MSGEDPSCIP 660 LLPLGFVINP VEPIKETTSG DGNSISSSEE AAAANGKNSG CLLTVGLQVL ASTIPSAKLN 720 LSSVNAINNH LCNTVNQITA ALSSGSGTSC PDNNGSVIGT CTQPNGAPKQ |
Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Probable transcription factor. {ECO:0000250}. |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | AM427944 | 2e-44 | AM427944.2 Vitis vinifera contig VV78X076481.6, whole genome shotgun sequence. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_006471522.1 | 0.0 | homeobox-leucine zipper protein HDG5 isoform X1 | ||||
Swissprot | Q9FJS2 | 0.0 | HDG5_ARATH; Homeobox-leucine zipper protein HDG5 | ||||
TrEMBL | A0A2H5PYQ9 | 0.0 | A0A2H5PYQ9_CITUN; Uncharacterized protein | ||||
STRING | XP_006471522.1 | 0.0 | (Citrus sinensis) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Malvids | OGEM4356 | 25 | 48 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT5G46880.1 | 0.0 | homeobox-7 |
Publications ? help Back to Top | |||
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