PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Neem_19393_f_1

Organism

Azadirachta indica

Taxonomic ID

124943

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Sapindales; Meliaceae; Azadirachta

Family

HD-ZIP

Protein Properties

Length: 770aa MW: 85517.2 Da PI: 5.4447

Description

HD-ZIP family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Neem_19393_f_1	genome	NGD	View Nucleic Acid

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	Homeobox	67.2	2.2e-21	88	143	1	56
TT--SS--HHHHHHHHHHHHHSSS--HHHHHHHHHHCTS-HHHHHHHHHHHHHHHH CS Homeobox 1 rrkRttftkeqleeLeelFeknrypsaeereeLAkklgLterqVkvWFqNrRakek 56 +++ +++t++q++e+e+lF+++++p+ ++r +L+++lgL+ rqVk+WFqNrR+++k Neem_19393_f_1 88 KKRYHRHTAHQIQEMEALFKECPHPDDKQRMKLSQELGLKPRQVKFWFQNRRTQMK 143 688999***********************************************998 PP
2	START	167.6	8.2e-53	285	509	2	206
HHHHHHHHHHHHHHHC-TT-EEEEEXCCTTEEEEEEESSS..............SCEEEEEEEECCSCHHHHHHHHHCCCGGCT-TT-S....EE CS START 2 laeeaaqelvkkalaeepgWvkssesengdevlqkfeeskv.............dsgealrasgvvdmvlallveellddkeqWdetla....ka 79 la + ++el+k+ a+ep+Wv+s eng+evl +e ++ +++ea r+++vv+m++ +lv ++ld + +W e ++ +a Neem_19393_f_1 285 LAISSMNELIKMCHANEPLWVRSN--ENGKEVLNLEEHARIfpwplnlkqhsseFRTEATRDTAVVIMNSITLVDTFLDAN-KWMELFPsivaRA 376 77899*****************..***999888889***********************************.**99999 PP EEEEEECTT.....EEEEEEEEXXTTXX-SSX.EEEEEEEEEEE..TTS-EEEEEEEEE-TTS--.-TTSEE-EESSEEEEEEEECTCEEEEEEE CS START 80 etlevissg.....galqlmvaelqalsplvp.RdfvfvRyirq.lgagdwvivdvSvdseqkppesssvvRaellpSgiliepksnghskvtwv 167 +t++vi sg g lqlm+aelq+ splvp R+ +f+Ry++q ++g+w+ivd +ds ++ ++s+ +++pSg++i++++ng+s+vtwv Neem_19393_f_1 377 KTIQVIASGvsgasGSLQLMYAELQVVSPLVPtRETYFLRYCQQnVEEGTWAIVDFPIDSFHENI-QPSFPLYRRRPSGCVIQDMPNGYSRVTWV 470 ******************************************99*********999998.67777777***************** PP E-EE--SSXXHHHHHHHHHHHHHHHHHHHHHHTXXXXXX CS START 168 ehvdlkgrlphwllrslvksglaegaktwvatlqrqcek 206 eh++++++ +h+++ ++v sg+a+ga++w++ lqrqce+ Neem_19393_f_1 471 EHAEMEEKPVHQIFSQFVYSGMAFGANRWLSVLQRQCER 509 ***********************************97 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
SuperFamily	SSF46689	2.84E-20	78	146	IPR009057	Homeodomain-like
Gene3D	G3DSA:1.10.10.60	1.3E-21	82	151	IPR009057	Homeodomain-like
PROSITE profile	PS50071	17.281	85	145	IPR001356	Homeobox domain
SMART	SM00389	3.7E-20	86	149	IPR001356	Homeobox domain
CDD	cd00086	4.90E-19	88	146	No hit	No description
Pfam	PF00046	7.4E-19	88	143	IPR001356	Homeobox domain
PROSITE pattern	PS00027	0	120	143	IPR017970	Homeobox, conserved site
PROSITE profile	PS50848	46.142	275	512	IPR002913	START domain
SuperFamily	SSF55961	3.19E-33	276	511	No hit	No description
CDD	cd08875	2.88E-119	279	508	No hit	No description
SMART	SM00234	6.1E-36	284	509	IPR002913	START domain
Pfam	PF01852	1.1E-44	285	509	IPR002913	START domain
Gene3D	G3DSA:3.30.530.20	2.4E-5	359	493	IPR023393	START-like domain
SuperFamily	SSF55961	3.41E-11	546	738	No hit	No description

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0006355	Biological Process	regulation of transcription, DNA-templated
GO:0048497	Biological Process	maintenance of floral organ identity
GO:0008289	Molecular Function	lipid binding
GO:0043565	Molecular Function	sequence-specific DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 770 aa Download sequence Send to blast
MYGDCQVMSN MGGGNIVSSE TLFSSPSTVQ NPNFNFMPFH SFPHIAPKEE NGLLMRSKED 60 MESGSGSEQF EEKSGNELES SEQQQPKKKR YHRHTAHQIQ EMEALFKECP HPDDKQRMKL 120 SQELGLKPRQ VKFWFQNRRT QMKAQQDRAD NAILRAENET LKNENYRLQA ELRSVICPNC 180 GGPAILGGIS FEDLRLENAR LREELERVCC LASRYSGRPV QAMAPAPPMI PPSLDLDMNI 240 YSRHFAVPMA TCTDIMPMPM LPETSAFPET GLILMEEEKS IAMELAISSM NELIKMCHAN 300 EPLWVRSNEN GKEVLNLEEH ARIFPWPLNL KQHSSEFRTE ATRDTAVVIM NSITLVDTFL 360 DANKWMELFP SIVARAKTIQ VIASGVSGAS GSLQLMYAEL QVVSPLVPTR ETYFLRYCQQ 420 NVEEGTWAIV DFPIDSFHEN IQPSFPLYRR RPSGCVIQDM PNGYSRVTWV EHAEMEEKPV 480 HQIFSQFVYS GMAFGANRWL SVLQRQCERI ASLMARNIAD LGVIPSPEAR KNLMRLAQRM 540 IGTFCVNIST SSGQSWTALS DSCADTVRIT TRKITEPGQP NGVILCAAST TWLPYPHYQV 600 FDLLRDERRR SQVASNSSQH VELMLQESCT DQCGSLVVYT TIDVDSIQLA MSGEDPSCIP 660 LLPLGFVINP VEPIKETTSG DGNSISSSEE AAAANGKNSG CLLTVGLQVL ASTIPSAKLN 720 LSSVNAINNH LCNTVNQITA ALSSGSGTSC PDNNGSVIGT CTQPNGAPKQ

Sequence ? help Back to Top

Protein Sequence Length: 770 aa Download sequence Send to blast

MYGDCQVMSN MGGGNIVSSE TLFSSPSTVQ NPNFNFMPFH SFPHIAPKEE NGLLMRSKED  60
MESGSGSEQF EEKSGNELES SEQQQPKKKR YHRHTAHQIQ EMEALFKECP HPDDKQRMKL  120
SQELGLKPRQ VKFWFQNRRT QMKAQQDRAD NAILRAENET LKNENYRLQA ELRSVICPNC  180
GGPAILGGIS FEDLRLENAR LREELERVCC LASRYSGRPV QAMAPAPPMI PPSLDLDMNI  240
YSRHFAVPMA TCTDIMPMPM LPETSAFPET GLILMEEEKS IAMELAISSM NELIKMCHAN  300
EPLWVRSNEN GKEVLNLEEH ARIFPWPLNL KQHSSEFRTE ATRDTAVVIM NSITLVDTFL  360
DANKWMELFP SIVARAKTIQ VIASGVSGAS GSLQLMYAEL QVVSPLVPTR ETYFLRYCQQ  420
NVEEGTWAIV DFPIDSFHEN IQPSFPLYRR RPSGCVIQDM PNGYSRVTWV EHAEMEEKPV  480
HQIFSQFVYS GMAFGANRWL SVLQRQCERI ASLMARNIAD LGVIPSPEAR KNLMRLAQRM  540
IGTFCVNIST SSGQSWTALS DSCADTVRIT TRKITEPGQP NGVILCAAST TWLPYPHYQV  600
FDLLRDERRR SQVASNSSQH VELMLQESCT DQCGSLVVYT TIDVDSIQLA MSGEDPSCIP  660
LLPLGFVINP VEPIKETTSG DGNSISSSEE AAAANGKNSG CLLTVGLQVL ASTIPSAKLN  720
LSSVNAINNH LCNTVNQITA ALSSGSGTSC PDNNGSVIGT CTQPNGAPKQ

Functional Description ? help Back to Top
Source	Description
UniProt	Probable transcription factor. {ECO:0000250}.

Annotation -- Nucleotide ? help Back to Top
Source	Hit ID	E-value	Description
GenBank	AM427944	2e-44	AM427944.2 Vitis vinifera contig VV78X076481.6, whole genome shotgun sequence.

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_006471522.1	0.0	homeobox-leucine zipper protein HDG5 isoform X1
Swissprot	Q9FJS2	0.0	HDG5_ARATH; Homeobox-leucine zipper protein HDG5
TrEMBL	A0A2H5PYQ9	0.0	A0A2H5PYQ9_CITUN; Uncharacterized protein
STRING	XP_006471522.1	0.0	(Citrus sinensis)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Malvids	OGEM4356	25	48

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT5G46880.1	0.0	homeobox-7

Publications ? help Back to Top
Duarte JM, et al. Expression pattern shifts following duplication indicative of subfunctionalization and neofunctionalization in regulatory genes of Arabidopsis. Mol. Biol. Evol., 2006. 23(2): p. 469-78 [PMID:16280546] Lung SC, et al. Arabidopsis ACYL-COA-BINDING PROTEIN1 interacts with STEROL C4-METHYL OXIDASE1-2 to modulate gene expression of homeodomain-leucine zipper IV transcription factors. New Phytol., 2018. 218(1): p. 183-200 [PMID:29288621]