PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Neem_19267_f_1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Sapindales; Meliaceae; Azadirachta
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Family | NAC | ||||||||
Protein Properties | Length: 275aa MW: 31615.2 Da PI: 8.3 | ||||||||
Description | NAC family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | NAM | 157.6 | 5.3e-49 | 27 | 155 | 2 | 128 |
NAM 2 ppGfrFhPtdeelvveyLkkkvegkkleleevikevdiykvePwdLpkkvkaeekewyfFskrdkkyatgkrknratksgyWkatgkdkevlsk. 95 pGfrFhPtdeel+ +yL++kv++k++++ e ik++diy+++PwdLpk ++ +ke yfF+kr +ky+++ r+nr+t sg+Wkatg dk+v+s Neem_19267_f_1 27 LPGFRFHPTDEELIGFYLRRKVDKKPISI-ELIKQIDIYRHDPWDLPKINSTPDKEGYFFCKRGRKYRNSIRPNRVTGSGFWKATGIDKPVYSLg 120 59***************************.89***************6666678899************************************86 PP NAM 96 ..kgelvglkktLvfykgrapkgektdWvmheyrl 128 ++ +glkktLv+y+g+a kg+ktdW+mhe+rl Neem_19267_f_1 121 geGRDCIGLKKTLVYYRGSAGKGTKTDWMMHEFRL 155 545555***************************98 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
SuperFamily | SSF101941 | 4.84E-54 | 25 | 188 | IPR003441 | NAC domain |
PROSITE profile | PS51005 | 51.789 | 26 | 188 | IPR003441 | NAC domain |
Pfam | PF02365 | 4.2E-25 | 28 | 155 | IPR003441 | NAC domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0003677 | Molecular Function | DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 275 aa Download sequence Send to blast |
MVNLAREITM SSQNPAAGYK DEEADQLPGF RFHPTDEELI GFYLRRKVDK KPISIELIKQ 60 IDIYRHDPWD LPKINSTPDK EGYFFCKRGR KYRNSIRPNR VTGSGFWKAT GIDKPVYSLG 120 GEGRDCIGLK KTLVYYRGSA GKGTKTDWMM HEFRLPSSND NRTNVIFTNA KTTLQEAEVW 180 TICRIFKRNV SHRKYTPDWR EQSSAATVDH INETNQFTVE QWSSSSTIIA NNSQSVASSS 240 NCPNAYGNDH HDLFTYENWD ELRSVVDFAF DSSVQ |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
1ut4_A | 5e-45 | 28 | 194 | 19 | 171 | NO APICAL MERISTEM PROTEIN |
1ut4_B | 5e-45 | 28 | 194 | 19 | 171 | NO APICAL MERISTEM PROTEIN |
1ut7_A | 5e-45 | 28 | 194 | 19 | 171 | NO APICAL MERISTEM PROTEIN |
1ut7_B | 5e-45 | 28 | 194 | 19 | 171 | NO APICAL MERISTEM PROTEIN |
4dul_A | 5e-45 | 28 | 194 | 19 | 171 | NAC domain-containing protein 19 |
4dul_B | 5e-45 | 28 | 194 | 19 | 171 | NAC domain-containing protein 19 |
Search in ModeBase |
Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Transcription factor that binds to the 5'- RRYGCCGT-3' consensus core sequence. Central longevity regulator. Negative regulator of leaf senescence. Modulates cellular H(2)O(2) levels and enhances tolerance to various abiotic stresses through the regulation of DREB2A. {ECO:0000269|PubMed:22345491}. |
Binding Motif ? help Back to Top | |||
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Motif ID | Method | Source | Motif file |
MP00353 | DAP | Transfer from AT3G12910 | Download |
Regulation -- Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | INDUCTION: Up-regulated by H(2)O(2), paraquat, ozone, 3-aminotriazole and salt stress. {ECO:0000269|PubMed:22345491}. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_006475534.2 | 1e-130 | transcription factor JUNGBRUNNEN 1-like | ||||
Swissprot | Q9SK55 | 7e-87 | NAC42_ARATH; Transcription factor JUNGBRUNNEN 1 | ||||
TrEMBL | A0A2H5MX12 | 1e-129 | A0A2H5MX12_CITUN; Uncharacterized protein | ||||
STRING | XP_006490488.1 | 1e-129 | (Citrus sinensis) | ||||
STRING | XP_006422208.1 | 1e-129 | (Citrus clementina) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Malvids | OGEM306 | 28 | 200 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT3G12910.1 | 5e-91 | NAC family protein |